Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   BEN76_RS11735 Genome accession   NZ_CP016896
Coordinates   2458746..2460842 (-) Length   698 a.a.
NCBI ID   WP_171261644.1    Uniprot ID   -
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2453746..2465842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11720 (BEN76_11720) - 2456197..2457045 (-) 849 WP_076033124.1 hypothetical protein -
  BEN76_RS11725 (BEN76_11725) aroB 2457055..2458143 (-) 1089 WP_076033597.1 3-dehydroquinate synthase -
  BEN76_RS11730 (BEN76_11730) aroK 2458167..2458709 (-) 543 WP_004934229.1 shikimate kinase AroK -
  BEN76_RS11735 (BEN76_11735) comQ 2458746..2460842 (-) 2097 WP_171261644.1 type IV pilus secretin PilQ family protein Machinery gene
  BEN76_RS11740 (BEN76_11740) comL 2460902..2461426 (-) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  BEN76_RS11745 (BEN76_11745) comO 2461426..2462160 (-) 735 WP_076033126.1 type 4a pilus biogenesis protein PilO Machinery gene
  BEN76_RS11750 (BEN76_11750) comN 2462157..2462795 (-) 639 WP_076033598.1 PilN domain-containing protein Machinery gene
  BEN76_RS11755 (BEN76_11755) comM 2462782..2463852 (-) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75371.80 Da        Isoelectric Point: 8.8498

>NTDB_id=193531 BEN76_RS11735 WP_171261644.1 2458746..2460842(-) (comQ) [Acinetobacter soli strain GFJ2]
MKQVIRQFTMASVTYAVMQVASAQVAITNVVPMTIPGQGTEVRIMFNGLPPQPQSYQLEQPSRLILDFDQATQKLAKRNI
ALTSNEASGIEVSADEKRARVTVNLKNSGAFTTRVEGNVFILKINNLASAATPLAAPAPKNQLSIGNIGFQKGAQGEGQV
VIDLQGSTTPVDVQQEGSKVVVRFPGIKIPTHLARRLNTTEFATPVASIDAFNNGSNGVVSIQSTGSYEYMAYQAENKLT
ISLKRPQDNVRLNSKNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLRLKDVPWDQALDIILKTKN
LDKRRNGNVIWIAPVTEMIKSEEDEAKAIAQSTKLSPLQTEFIQLKYAKAVDIEKLITQGRNSGTTSTATTGGAAVEPLG
DSVGTLLSPRGTISFDPRTNTLILNDTAQKIDQIRRMIDLLDIPVKQVMIEARIVRASTSFSKEMGVKWGVLSTGNDLQV
TGKNSTLWNLRNGDTINNNLSVDLGVSTAGASSISFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATG
VEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAILNKNAINTNVLVNNGETVV
LGGVFEQTTSNAVTKVPFLGDLPYVGHLFKKTAKSEAKNELLIFVTPRIVNDTIVGNH

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=193531 BEN76_RS11735 WP_171261644.1 2458746..2460842(-) (comQ) [Acinetobacter soli strain GFJ2]
ATGAAACAGGTAATTCGTCAATTTACGATGGCAAGTGTGACCTATGCCGTGATGCAAGTTGCAAGTGCGCAGGTCGCCAT
TACCAATGTCGTCCCGATGACGATTCCGGGACAAGGGACCGAAGTGCGGATTATGTTTAATGGACTGCCGCCACAACCTC
AGTCGTATCAACTTGAGCAGCCTTCTCGTCTGATTCTGGATTTCGATCAAGCCACGCAAAAACTGGCCAAACGCAATATT
GCGCTCACCAGCAATGAAGCCTCGGGAATTGAAGTCAGTGCAGATGAAAAACGCGCCCGTGTCACGGTGAATCTTAAAAA
TTCAGGTGCGTTTACCACACGTGTAGAAGGCAATGTCTTCATTCTTAAAATTAATAATCTGGCCTCTGCCGCGACTCCAC
TTGCCGCTCCAGCCCCAAAAAACCAGCTTTCTATTGGAAATATTGGATTTCAAAAGGGAGCACAAGGTGAGGGGCAGGTA
GTGATTGATCTTCAAGGCAGTACCACGCCTGTCGATGTACAGCAAGAAGGCAGCAAGGTGGTGGTGCGTTTTCCCGGCAT
AAAAATTCCGACGCATCTGGCGCGCCGCCTGAATACCACCGAGTTTGCCACGCCTGTGGCATCGATTGATGCATTCAATA
ATGGCAGCAACGGTGTGGTCTCGATTCAGTCGACGGGGAGTTATGAATACATGGCGTATCAGGCCGAAAATAAACTTACC
ATCAGTCTAAAGCGCCCACAAGATAATGTCAGACTAAACTCAAAAAACAACCAAAACTATACGGGTAAGAAGATTTCACT
GGATTTTCAAGATATTGAAGTACGCCGCGTATTACAGTTACTGGCCGATTTTACCAATATCAATATGGTGACCGCAGATT
CTGTACAAGGCAATATTACCTTGCGCCTTAAAGACGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAAT
CTGGACAAGCGCCGTAATGGGAATGTGATCTGGATAGCGCCTGTCACCGAAATGATCAAGTCTGAAGAAGATGAAGCCAA
AGCGATTGCACAAAGTACCAAGCTCTCGCCGTTACAAACCGAGTTTATTCAGCTTAAATATGCCAAAGCGGTAGATATTG
AAAAATTGATTACTCAAGGTCGAAACAGCGGTACTACCAGTACTGCTACGACTGGTGGTGCGGCGGTGGAGCCTTTGGGC
GATAGCGTTGGCACTTTGTTAAGCCCGCGTGGCACGATTTCTTTTGATCCGCGTACCAACACTCTTATCTTAAATGACAC
TGCGCAAAAGATTGACCAGATCCGACGCATGATTGATTTGCTGGATATTCCGGTGAAGCAAGTCATGATTGAAGCACGGA
TTGTGCGTGCATCAACCTCGTTTAGTAAAGAAATGGGAGTGAAATGGGGCGTCTTGTCGACAGGCAATGATTTACAGGTC
ACAGGTAAAAATTCAACCTTATGGAACTTGCGTAATGGCGACACCATTAACAATAACTTAAGTGTTGACTTAGGGGTATC
GACAGCAGGCGCCAGCAGTATTTCATTTGGTTTAATCAGTTTGTCTGATTTTATGCTGGACTTGGAGCTGTCTGCCTTGC
AGGCTGACGGATACGGCGAAGTGATTTCAACACCGAAAGTGATGTCCGCCGACAAGCAAAAAGCCAAAGTAGCAACCGGT
GTGGAAGTGCCGTATCAGTCCACCACCAATTCGGCAGCAGGATCAACTGCCACAACCTCATTTAAAGAAGCATTGCTCAG
TCTGGAAGTCACACCCAACATTACCCCAGATGGTAAAATTTTGATGGAACTGAATATTGCCAATGACTCGATCAATAGTT
ATGCCCAAAACGGTGAGGCCATTTTAAATAAAAATGCAATCAATACCAATGTCTTGGTGAATAACGGTGAAACAGTTGTC
TTGGGTGGTGTATTCGAACAAACCACGTCTAATGCGGTGACTAAAGTGCCATTTTTAGGTGATTTGCCTTATGTGGGGCA
TTTATTTAAAAAGACCGCAAAAAGTGAAGCGAAAAATGAACTGCTAATTTTTGTGACACCTCGAATAGTTAATGACACTA
TTGTTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(532-690)

AMIN domain (AMIN)

(38-114)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-447)

Secretin and TonB N terminus short domain (STN)

(291-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

86.601

100

0.88
  pilQ Acinetobacter baumannii D1279779

69.986

100

0.725
  pilQ Acinetobacter baumannii strain A118

69.986

100

0.725
  pilQ Pseudomonas aeruginosa PAK

40.714

100

0.408
  pilQ Legionella pneumophila strain ERS1305867

38.462

98.711

0.38
  pilQ Legionella pneumophila strain Lp02

38.316

98.711

0.378

Multiple sequence alignment