Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BEN76_RS11600 Genome accession   NZ_CP016896
Coordinates   2428198..2428866 (-) Length   222 a.a.
NCBI ID   WP_076033113.1    Uniprot ID   A0A1P8EK87
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423198..2433866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11590 (BEN76_11590) comE 2423286..2423759 (-) 474 WP_076033111.1 type IV pilin protein Machinery gene
  BEN76_RS11595 (BEN76_11595) comC 2423825..2428180 (-) 4356 WP_076033112.1 PilC/PilY family type IV pilus protein Machinery gene
  BEN76_RS11600 (BEN76_11600) pilX 2428198..2428866 (-) 669 WP_076033113.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BEN76_RS11605 (BEN76_11605) comB 2428863..2429831 (-) 969 WP_076033114.1 PilW family protein Machinery gene
  BEN76_RS11610 (BEN76_11610) pilV 2429832..2430368 (-) 537 WP_076033115.1 type IV pilus modification protein PilV Machinery gene
  BEN76_RS11615 (BEN76_11615) - 2430365..2430811 (-) 447 WP_076033116.1 pilus assembly FimT family protein -
  BEN76_RS11620 (BEN76_11620) ispH 2430932..2431882 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BEN76_RS11625 (BEN76_11625) gmk 2432018..2432641 (+) 624 WP_025095725.1 guanylate kinase -
  BEN76_RS11630 (BEN76_11630) rpoZ 2432710..2432991 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23808.09 Da        Isoelectric Point: 8.0980

>NTDB_id=193527 BEN76_RS11600 WP_076033113.1 2428198..2428866(-) (pilX) [Acinetobacter soli strain GFJ2]
MKTNQQGATLIVVLMILLLIMVVGTLAIRQSVSSLKMVANNQIQALLLQNSDAALMYFQNPVNTSTLASANGVVNYFRNV
GNLNQEMVSCFNKTAPFVMSNMGVVNSSGTVDNQASCKSTDAAGGRTQVVTQVYIKKAASSDNQPFADYARGTDITTAKT
ESSLRLQLTSVSVMTGFSSAEDINTCLNQSASSAISCLSQKQALFNSQVAEYRFLSDFEPPK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=193527 BEN76_RS11600 WP_076033113.1 2428198..2428866(-) (pilX) [Acinetobacter soli strain GFJ2]
ATGAAAACCAATCAACAAGGTGCAACCCTGATCGTGGTGCTGATGATTTTACTCTTGATCATGGTGGTGGGAACTTTGGC
TATCCGGCAAAGTGTCAGCTCGCTCAAAATGGTTGCAAATAATCAGATTCAGGCTTTATTGCTACAAAATTCGGATGCTG
CCCTGATGTATTTTCAAAATCCTGTGAATACCAGTACCTTGGCTTCTGCAAATGGTGTCGTTAATTATTTTCGTAATGTC
GGTAATCTTAATCAGGAAATGGTGAGCTGCTTTAATAAGACAGCGCCGTTTGTGATGAGCAATATGGGTGTGGTCAATAG
TTCAGGCACGGTCGATAACCAAGCCTCATGTAAAAGTACCGATGCTGCGGGTGGGCGCACGCAGGTGGTTACACAGGTGT
ATATCAAAAAGGCAGCATCATCGGACAATCAGCCATTTGCTGACTATGCGCGTGGTACCGATATCACCACTGCAAAAACG
GAAAGCAGTTTACGCCTACAACTGACTTCAGTTTCTGTCATGACCGGATTTTCATCTGCCGAAGATATCAATACCTGTTT
GAATCAATCGGCCAGCAGTGCCATCAGTTGTTTGAGTCAGAAGCAGGCCTTGTTTAATTCACAAGTGGCCGAGTATCGCT
TCTTATCTGACTTTGAGCCACCTAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EK87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

78.378

100

0.784

Multiple sequence alignment