Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   BEN76_RS11605 Genome accession   NZ_CP016896
Coordinates   2428863..2429831 (-) Length   322 a.a.
NCBI ID   WP_076033114.1    Uniprot ID   A0A1P8EK83
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423863..2434831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11600 (BEN76_11600) pilX 2428198..2428866 (-) 669 WP_076033113.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BEN76_RS11605 (BEN76_11605) comB 2428863..2429831 (-) 969 WP_076033114.1 PilW family protein Machinery gene
  BEN76_RS11610 (BEN76_11610) pilV 2429832..2430368 (-) 537 WP_076033115.1 type IV pilus modification protein PilV Machinery gene
  BEN76_RS11615 (BEN76_11615) - 2430365..2430811 (-) 447 WP_076033116.1 pilus assembly FimT family protein -
  BEN76_RS11620 (BEN76_11620) ispH 2430932..2431882 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BEN76_RS11625 (BEN76_11625) gmk 2432018..2432641 (+) 624 WP_025095725.1 guanylate kinase -
  BEN76_RS11630 (BEN76_11630) rpoZ 2432710..2432991 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34934.64 Da        Isoelectric Point: 8.3453

>NTDB_id=193528 BEN76_RS11605 WP_076033114.1 2428863..2429831(-) (comB) [Acinetobacter soli strain GFJ2]
MTRLHQAGFTLIELMVAITLGLLITAAAIQLYLTSVTSFNVQKAMANIQDSASFGVNYILDDVRKANLSASSAYINDQQA
NAGLLLTASNVSDQVSGKYLLTLAETALTKSAVGDSNVDQKSDQLTIRYQATQSDYDCTGKTLVAGTYVAQRYFVGSDKA
LRCVADQYMRNGNTITAVDGKPKTTLDLSGVGQIIIPSVDYMRIKVGYVKGALNNPTALNYVSVADYLDTVKTPTMTKNI
DGISQQIKPYINVIQIGLLVQSNETAGNDVNVRNRNKKTFDVLGQSVALNSTNQDTRLRQVVTQTISLRNAMGWVEEGYV
TQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=193528 BEN76_RS11605 WP_076033114.1 2428863..2429831(-) (comB) [Acinetobacter soli strain GFJ2]
ATGACCCGATTACATCAGGCTGGATTTACACTGATTGAACTGATGGTGGCCATTACGTTGGGGCTTTTGATTACAGCGGC
AGCTATTCAGCTGTACCTCACCAGTGTCACCAGTTTTAATGTGCAAAAAGCCATGGCGAATATTCAAGACAGTGCCAGTT
TTGGGGTGAACTATATTTTAGATGATGTTCGAAAGGCAAACTTGAGCGCATCGTCTGCATATATCAACGATCAACAAGCA
AATGCGGGATTGCTTCTGACTGCAAGTAACGTCAGTGATCAAGTGAGTGGAAAATACTTATTAACGCTTGCCGAGACAGC
ACTGACCAAAAGCGCAGTTGGAGACAGTAATGTCGATCAAAAAAGTGATCAGCTTACGATTCGTTATCAGGCAACGCAAA
GCGATTATGACTGTACCGGCAAAACCCTTGTCGCAGGTACTTATGTGGCTCAGCGATATTTTGTTGGCAGTGACAAAGCA
TTGCGCTGTGTGGCCGATCAATATATGCGAAATGGAAACACGATAACCGCAGTAGATGGCAAGCCAAAAACCACACTGGA
TTTGTCTGGCGTGGGGCAAATTATTATTCCCTCGGTCGATTATATGCGCATTAAAGTGGGCTATGTGAAAGGCGCTTTGA
ATAATCCAACAGCGCTCAATTACGTGTCTGTGGCAGATTATCTCGACACCGTAAAAACACCCACAATGACCAAAAATATT
GATGGTATCTCACAGCAGATCAAGCCATACATCAATGTGATTCAAATTGGCTTACTGGTGCAGTCAAATGAAACAGCAGG
CAATGATGTAAATGTTAGAAATCGTAATAAAAAGACTTTTGATGTCTTGGGGCAGTCGGTTGCATTAAACAGTACAAATC
AAGATACACGATTGCGTCAGGTAGTGACTCAGACCATTTCATTAAGAAATGCCATGGGTTGGGTGGAAGAGGGGTATGTC
ACACAATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(153-310)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EK83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

77.603

98.447

0.764

Multiple sequence alignment