Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BEE12_RS08605 | Genome accession | NZ_CP016889 |
| Coordinates | 1909261..1909815 (+) | Length | 184 a.a. |
| NCBI ID | WP_069025677.1 | Uniprot ID | A0A506QVH6 |
| Organism | Pantoea agglomerans strain C410P1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1904261..1914815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEE12_RS08590 (BEE12_08590) | - | 1905284..1906009 (+) | 726 | WP_069025674.1 | PFL_4669 family integrating conjugative element protein | - |
| BEE12_RS08595 (BEE12_08595) | - | 1906023..1908041 (+) | 2019 | WP_069025675.1 | DNA topoisomerase III | - |
| BEE12_RS08600 (BEE12_08600) | - | 1908673..1909185 (+) | 513 | WP_069025676.1 | STY4534 family ICE replication protein | - |
| BEE12_RS08605 (BEE12_08605) | ssb | 1909261..1909815 (+) | 555 | WP_069025677.1 | single-stranded DNA-binding protein | Machinery gene |
| BEE12_RS08610 (BEE12_08610) | - | 1909915..1910346 (+) | 432 | WP_069025678.1 | DUF29 domain-containing protein | - |
| BEE12_RS08615 (BEE12_08615) | - | 1910737..1910988 (+) | 252 | WP_069025679.1 | hypothetical protein | - |
| BEE12_RS08620 (BEE12_08620) | - | 1911117..1912442 (+) | 1326 | WP_069025680.1 | TcpQ domain-containing protein | - |
| BEE12_RS08625 (BEE12_08625) | pilM | 1912444..1912887 (+) | 444 | WP_069025681.1 | type IV pilus biogenesis protein PilM | - |
| BEE12_RS08630 (BEE12_08630) | - | 1912898..1914571 (+) | 1674 | WP_069025682.1 | PilN family type IVB pilus formation outer membrane protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20079.44 Da Isoelectric Point: 8.8030
>NTDB_id=193380 BEE12_RS08605 WP_069025677.1 1909261..1909815(+) (ssb) [Pantoea agglomerans strain C410P1]
MSARGVNKVILVGNLGQDPEVRYMPGGKAVTGLSLATSETWRDKQTGENREITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLKTRKWEDNAGTTRYTTEVIVGVNGTMQMLGGAKNSTNTSGNNKPSGQQSGWGQPQQPQPSQPQQSAPRNPANEPPM
DFDDDIPFLGHGYGVCRKAIYAIS
MSARGVNKVILVGNLGQDPEVRYMPGGKAVTGLSLATSETWRDKQTGENREITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLKTRKWEDNAGTTRYTTEVIVGVNGTMQMLGGAKNSTNTSGNNKPSGQQSGWGQPQQPQPSQPQQSAPRNPANEPPM
DFDDDIPFLGHGYGVCRKAIYAIS
Nucleotide
Download Length: 555 bp
>NTDB_id=193380 BEE12_RS08605 WP_069025677.1 1909261..1909815(+) (ssb) [Pantoea agglomerans strain C410P1]
ATGTCCGCACGCGGCGTCAACAAAGTTATCCTGGTCGGCAATCTCGGTCAGGACCCCGAAGTTCGTTATATGCCTGGCGG
TAAAGCAGTGACCGGTCTTTCGCTGGCCACTTCCGAAACCTGGCGTGACAAACAGACCGGTGAAAACCGGGAAATAACCG
AATGGCATCGCGTAGTGCTGTTTGGGAAGCTGGCTGAAGTTGCCGGTGAATACCTGCGTAAGGGTTCACAGGTCTATATT
GAAGGTCAGCTGAAAACCCGCAAATGGGAAGATAACGCGGGAACTACGCGTTATACGACTGAAGTAATTGTGGGCGTAAA
CGGAACGATGCAGATGCTGGGCGGGGCGAAAAACAGCACCAATACCAGTGGAAACAATAAGCCGTCAGGCCAGCAGAGTG
GATGGGGCCAGCCACAGCAGCCACAGCCTTCTCAGCCACAACAGTCGGCTCCCAGAAATCCGGCGAACGAGCCGCCAATG
GACTTTGACGATGATATACCGTTCCTCGGACACGGTTACGGAGTCTGTCGCAAAGCCATTTACGCAATTTCGTAA
ATGTCCGCACGCGGCGTCAACAAAGTTATCCTGGTCGGCAATCTCGGTCAGGACCCCGAAGTTCGTTATATGCCTGGCGG
TAAAGCAGTGACCGGTCTTTCGCTGGCCACTTCCGAAACCTGGCGTGACAAACAGACCGGTGAAAACCGGGAAATAACCG
AATGGCATCGCGTAGTGCTGTTTGGGAAGCTGGCTGAAGTTGCCGGTGAATACCTGCGTAAGGGTTCACAGGTCTATATT
GAAGGTCAGCTGAAAACCCGCAAATGGGAAGATAACGCGGGAACTACGCGTTATACGACTGAAGTAATTGTGGGCGTAAA
CGGAACGATGCAGATGCTGGGCGGGGCGAAAAACAGCACCAATACCAGTGGAAACAATAAGCCGTCAGGCCAGCAGAGTG
GATGGGGCCAGCCACAGCAGCCACAGCCTTCTCAGCCACAACAGTCGGCTCCCAGAAATCCGGCGAACGAGCCGCCAATG
GACTTTGACGATGATATACCGTTCCTCGGACACGGTTACGGAGTCTGTCGCAAAGCCATTTACGCAATTTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.978 |
96.739 |
0.658 |
| ssb | Glaesserella parasuis strain SC1401 |
51.613 |
100 |
0.522 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
95.652 |
0.424 |
| ssb | Neisseria meningitidis MC58 |
44.318 |
95.652 |
0.424 |