Detailed information NTG0193347

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XJ27_RS21985
• Genome accession: NZ_CP016878
• Coordinates: 4900103..4901551 (-)
• Length: 482 a.a.
• NCBI ID: WP_181018098.1
• Uniprot ID: -
• Organism: Xanthomonas hortorum strain B07-007
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4895103..4906551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XJ27_RS21970 (XJ27_20985)	pilA/pilAI	4896378..4896785 (+)	408	WP_074058081.1	pilin	Machinery gene
XJ27_RS21975 (XJ27_20990)	-	4896880..4897842 (-)	963	WP_006448937.1	IS1595 family transposase	-
XJ27_RS21980 (XJ27_20995)	pilB	4898042..4899778 (+)	1737	WP_074058080.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XJ27_RS21985 (XJ27_21000)	pilR	4900103..4901551 (-)	1449	WP_181018098.1	sigma-54 dependent transcriptional regulator	Regulator
XJ27_RS21990 (XJ27_21005)	-	4901637..4903250 (-)	1614	WP_006448368.1	HAMP domain-containing sensor histidine kinase	-
XJ27_RS21995 (XJ27_21010)	sucC	4903483..4904652 (+)	1170	WP_006450728.1	ADP-forming succinate--CoA ligase subunit beta	-
XJ27_RS22000 (XJ27_21015)	sucD	4904677..4905552 (+)	876	WP_006450729.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 482 a.a.
• Molecular weight: 52295.90 Da
• Isoelectric Point: 6.5126

>NTDB_id=193347 XJ27_RS21985 WP_181018098.1 4900103..4901551(-) (pilR) [Xanthomonas hortorum strain B07-007]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLL
GDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAH
ADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRI
NVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDL
RLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLG
ME

Nucleotide

• Length: 1449 bp

>NTDB_id=193347 XJ27_RS21985 WP_181018098.1 4900103..4901551(-) (pilR) [Xanthomonas hortorum strain B07-007]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCACGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCGCCGCCGGAACAGGCCAGCCGCCTGCTC
GGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTGTACATCGTCGG
CGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGCCGG
TGAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCGCAT
GCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGTACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCTGCAGAT
GCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTACGCCCGGTCGGTGCCTCCACCGAATCGCTGGTGGACGTGC
GCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTTTCCGCCACGACCTGTACTACCGCATC
AACGTGATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCATCGCGCG
CCTGGCACGCAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCGCTCGACGCGCTGGACACATACGGCTTCCCCG
GCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGCGACCTG
CGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGTCGTCGA
CATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGGAAGAAA
ACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGGGCGTTGCGCTACAAGCTGAAGAAGTTGGGG
ATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (439-479)

• Sigma-54 interaction domain (Sigma54_activat) (160-325)

• Response regulator receiver domain (Response_reg) (28-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.557	95.643	0.608
pilR	Acinetobacter baumannii strain A118	49.353	96.266	0.475