Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XJ27_RS01745 Genome accession   NZ_CP016878
Coordinates   395114..395644 (+) Length   176 a.a.
NCBI ID   WP_095574639.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain B07-007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 390114..400644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XJ27_RS01725 (XJ27_01670) - 390440..390898 (+) 459 WP_006448872.1 hypothetical protein -
  XJ27_RS01730 (XJ27_01675) murL 390895..392250 (+) 1356 WP_074057696.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  XJ27_RS01735 (XJ27_01680) murD 392231..393640 (+) 1410 WP_074057695.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  XJ27_RS01740 (XJ27_01685) - 393842..394840 (-) 999 WP_074057694.1 polyprenyl synthetase family protein -
  XJ27_RS01745 (XJ27_01690) ssb 395114..395644 (+) 531 WP_095574639.1 single-stranded DNA-binding protein Machinery gene
  XJ27_RS01750 (XJ27_01695) - 395955..398153 (+) 2199 WP_074057693.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18899.82 Da        Isoelectric Point: 5.3177

>NTDB_id=193334 XJ27_RS01745 WP_095574639.1 395114..395644(+) (ssb) [Xanthomonas hortorum strain B07-007]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGQGGGQDYAPRRQQPAQQ
QAAPPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=193334 XJ27_RS01745 WP_095574639.1 395114..395644(+) (ssb) [Xanthomonas hortorum strain B07-007]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAG
CAGGCCGCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.196

100

0.483
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.477
  ssb Neisseria meningitidis MC58

44.886

100

0.449
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.449

Multiple sequence alignment