Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BE843_RS08195 Genome accession   NZ_CP016872
Coordinates   1800823..1801302 (+) Length   159 a.a.
NCBI ID   WP_011214630.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1795823..1806302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS08175 (BE843_08175) - 1797074..1797970 (-) 897 WP_011214633.1 hydroxymyristoyl-ACP dehydratase -
  BE843_RS08180 (BE843_08180) - 1797970..1798383 (-) 414 WP_011214632.1 acyl carrier protein -
  BE843_RS08185 (BE843_08185) fabL 1798454..1799212 (-) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  BE843_RS08190 (BE843_08190) - 1799374..1800741 (+) 1368 WP_011214631.1 MFS transporter -
  BE843_RS08195 (BE843_08195) ssb 1800823..1801302 (+) 480 WP_011214630.1 single-stranded DNA-binding protein Machinery gene
  BE843_RS08200 (BE843_08200) rplQ 1801369..1801752 (-) 384 WP_011214629.1 50S ribosomal protein L17 -
  BE843_RS08205 (BE843_08205) - 1801771..1802763 (-) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  BE843_RS08210 (BE843_08210) rpsD 1802782..1803402 (-) 621 WP_010946102.1 30S ribosomal protein S4 -
  BE843_RS08215 (BE843_08215) rpsK 1803419..1803817 (-) 399 WP_010946101.1 30S ribosomal protein S11 -
  BE843_RS08220 (BE843_08220) rpsM 1803841..1804197 (-) 357 WP_010946100.1 30S ribosomal protein S13 -
  BE843_RS15280 rpmJ 1804275..1804388 (-) 114 WP_010946099.1 50S ribosomal protein L36 -
  BE843_RS08225 (BE843_08225) secY 1804405..1805733 (-) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  BE843_RS08230 (BE843_08230) rplO 1805736..1806170 (-) 435 WP_010946097.1 50S ribosomal protein L15 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17701.48 Da        Isoelectric Point: 4.6616

>NTDB_id=193135 BE843_RS08195 WP_011214630.1 1800823..1801302(+) (ssb) [Legionella pneumophila subsp. pneumophila strain FFI104]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSTTNYDDMPSFQGTSTPQQASTKNQVTPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=193135 BE843_RS08195 WP_011214630.1 1800823..1801302(+) (ssb) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGCACAACTAATTACGACGACATGCCTTCATTTCAGGGAACGTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGTAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

48.571

100

0.535
  ssb Neisseria meningitidis MC58

40.23

100

0.44
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434

Multiple sequence alignment