Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BE842_RS12740 Genome accession   NZ_CP016870
Coordinates   2880741..2881220 (-) Length   159 a.a.
NCBI ID   WP_011214630.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2875741..2886220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS12705 (BE842_12705) rplO 2875873..2876307 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  BE842_RS12710 (BE842_12710) secY 2876310..2877638 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  BE842_RS15540 rpmJ 2877655..2877768 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  BE842_RS12715 (BE842_12715) rpsM 2877846..2878202 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  BE842_RS12720 (BE842_12720) rpsK 2878226..2878624 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  BE842_RS12725 (BE842_12725) rpsD 2878641..2879261 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  BE842_RS12730 (BE842_12730) - 2879280..2880272 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  BE842_RS12735 (BE842_12735) rplQ 2880291..2880674 (+) 384 WP_011214629.1 50S ribosomal protein L17 -
  BE842_RS12740 (BE842_12740) ssb 2880741..2881220 (-) 480 WP_011214630.1 single-stranded DNA-binding protein Machinery gene
  BE842_RS12745 (BE842_12745) - 2881302..2882669 (-) 1368 WP_011214631.1 MFS transporter -
  BE842_RS12750 (BE842_12750) fabL 2882831..2883589 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  BE842_RS12755 (BE842_12755) - 2883660..2884073 (+) 414 WP_011214632.1 acyl carrier protein -
  BE842_RS12760 (BE842_12760) - 2884073..2884969 (+) 897 WP_011214633.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17701.48 Da        Isoelectric Point: 4.6616

>NTDB_id=193102 BE842_RS12740 WP_011214630.1 2880741..2881220(-) (ssb) [Legionella pneumophila subsp. pneumophila strain FFI103]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSTTNYDDMPSFQGTSTPQQASTKNQVTPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=193102 BE842_RS12740 WP_011214630.1 2880741..2881220(-) (ssb) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGCACAACTAATTACGACGACATGCCTTCATTTCAGGGAACGTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGTAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

48.571

100

0.535
  ssb Neisseria meningitidis MC58

40.23

100

0.44
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434

Multiple sequence alignment