Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A7U47_RS13705 Genome accession   NZ_CP016858
Coordinates   2551419..2552105 (+) Length   228 a.a.
NCBI ID   WP_105165749.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1971.C01     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2546419..2557105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7U47_RS13670 (A7U47_1244) yqeH 2546946..2548046 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  A7U47_RS13675 (A7U47_1245) aroE 2548060..2548866 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  A7U47_RS13680 (A7U47_1246) yhbY 2548870..2549160 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  A7U47_RS13685 (A7U47_1247) nadD 2549163..2549732 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  A7U47_RS13690 (A7U47_1248) yqeK 2549722..2550306 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  A7U47_RS13695 (A7U47_1249) rsfS 2550307..2550660 (+) 354 WP_001088022.1 ribosome silencing factor -
  A7U47_RS13700 (A7U47_1250) - 2550663..2551379 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  A7U47_RS13705 (A7U47_1251) comEA 2551419..2552105 (+) 687 WP_105165749.1 ComEA family DNA-binding protein Machinery gene
  A7U47_RS13710 (A7U47_1252) - 2552197..2552658 (+) 462 WP_000439693.1 ComE operon protein 2 -
  A7U47_RS13715 (A7U47_05220) comEC 2552663..2554864 (+) 2202 WP_001548978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7U47_RS13720 (A7U47_05225) holA 2554921..2555895 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  A7U47_RS13725 (A7U47_1258) rpsT 2555940..2556191 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25875.55 Da        Isoelectric Point: 9.3305

>NTDB_id=192932 A7U47_RS13705 WP_105165749.1 2551419..2552105(+) (comEA) [Staphylococcus aureus strain 1971.C01]
MVLLYQFLLRYKDFLIQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=192932 A7U47_RS13705 WP_105165749.1 2551419..2552105(+) (comEA) [Staphylococcus aureus strain 1971.C01]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAATTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment