Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BER93_RS13385 Genome accession   NZ_CP016833
Coordinates   2929152..2929667 (-) Length   171 a.a.
NCBI ID   WP_002802020.1    Uniprot ID   A0A1Y6HKN0
Organism   Xanthomonas fragariae isolate Fap29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2924152..2934667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BER93_RS13365 (BER93_13365) - 2924338..2924946 (-) 609 WP_002802016.1 nucleotidyltransferase family protein -
  BER93_RS22375 - 2925081..2925455 (+) 375 WP_145954069.1 hypothetical protein -
  BER93_RS13370 (BER93_13370) - 2925580..2926593 (-) 1014 WP_040761920.1 XdhC family protein -
  BER93_RS21125 - 2926590..2926985 (-) 396 Protein_2683 molybdopterin cofactor-binding domain-containing protein -
  BER93_RS22915 - 2926986..2927216 (-) 231 Protein_2684 NAD(P)-dependent alcohol dehydrogenase -
  BER93_RS13380 (BER93_13380) - 2927512..2928996 (+) 1485 WP_002802019.1 sensor domain-containing diguanylate cyclase -
  BER93_RS13385 (BER93_13385) ssb 2929152..2929667 (-) 516 WP_002802020.1 single-stranded DNA-binding protein Machinery gene
  BER93_RS13395 (BER93_13395) - 2929942..2930940 (+) 999 WP_002802028.1 polyprenyl synthetase family protein -
  BER93_RS13400 (BER93_13400) - 2931128..2931928 (-) 801 WP_040761902.1 dienelactone hydrolase family protein -
  BER93_RS13405 (BER93_13405) murD 2932092..2933501 (-) 1410 WP_002802032.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18559.43 Da        Isoelectric Point: 5.0179

>NTDB_id=192552 BER93_RS13385 WP_002802020.1 2929152..2929667(-) (ssb) [Xanthomonas fragariae isolate Fap29]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATSSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPPRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=192552 BER93_RS13385 WP_002802020.1 2929152..2929667(-) (ssb) [Xanthomonas fragariae isolate Fap29]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGTAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATTACCCGCGTCAGTCTGGCTACCAGCAGCATGCGCAAGGACCGCGAGGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGATGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGCAGGGCG
GCGGTGGCGGCGGTCAGGGTGGCGGTCAGGATTACGCCCCGCCTCGTCAGCAGCCGGCCCAGCAGCAATCGGCACCGCCG
ATGGACGATTTTGCCGACGATGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HKN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.222

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.491
  ssb Neisseria meningitidis MC58

45.455

100

0.468
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.468

Multiple sequence alignment