Detailed information NTG0192543

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BER93_RS03635
• Genome accession: NZ_CP016833
• Coordinates: 814856..815914 (+)
• Length: 352 a.a.
• NCBI ID: WP_002812410.1
• Uniprot ID: A0A1Y6HAD5
• Organism: Xanthomonas fragariae isolate Fap29
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 809856..820914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BER93_RS03620 (BER93_03620)	-	809967..811256 (+)	1290	WP_002812413.1	citrate synthase	-
BER93_RS03625 (BER93_03625)	-	811369..812019 (-)	651	WP_002812412.1	hypothetical protein	-
BER93_RS03630 (BER93_03630)	-	812215..814737 (-)	2523	WP_087946507.1	penicillin-binding protein 1A	-
BER93_RS03635 (BER93_03635)	comM	814856..815914 (+)	1059	WP_002812410.1	pilus assembly protein PilM	Machinery gene
BER93_RS03640 (BER93_03640)	-	815914..816669 (+)	756	WP_002812409.1	PilN domain-containing protein	-
BER93_RS03645 (BER93_03645)	-	816666..817331 (+)	666	WP_002812408.1	type 4a pilus biogenesis protein PilO	-
BER93_RS03650 (BER93_03650)	-	817328..817867 (+)	540	WP_002812407.1	pilus assembly protein PilP	-
BER93_RS03655 (BER93_03655)	-	817882..819780 (+)	1899	WP_002812406.1	type IV pilus secretin PilQ family protein	-
BER93_RS03660 (BER93_03660)	-	819843..820811 (+)	969	WP_065975077.1	IS5 family transposase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37683.32 Da
• Isoelectric Point: 4.4342

>NTDB_id=192543 BER93_RS03635 WP_002812410.1 814856..815914(+) (comM) [Xanthomonas fragariae isolate Fap29]
MGLLRKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDGDLEAQVELEATNYIPYPIEEVNLDFEVLGPLPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALIASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=192543 BER93_RS03635 WP_002812410.1 814856..815914(+) (comM) [Xanthomonas fragariae isolate Fap29]
GTGGGGCTTCTACGCAAGAGTCAATCGCCACTTATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTTTTGCAGCTGTC
GCGCAGCGGGAATCGTTTTCGCGTGGATCATTACGCAGTGGAACCATTGCCGCCGAATGCGGTCGTTGAAAAGAACATCG
TCGAAGTGGAGGCGGTCGGCGAAGCCATTCGCCGCGCCATGAACCGTTCCGGCAGTAAGGCCAAGAACGCGGCCGCAGCC
GTGGCCGGGTCGGCAGTGATCACCAAATTGATCCCGATGCCGGCTGATCTGGACGACGGCGATCTGGAAGCTCAGGTCGA
GCTGGAAGCCACCAATTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTTGGCCCGCTGCCCAACA
GTCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCACGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTTGGC
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCTTTTGCGGTCGAAAACGCGTTTGCCCTGATCGCCAGCGAACTGCCGGT
CGCCGCCGATGCGGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACTACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAACTGACCGATGAAGTGATGCGCCGTTATGGATTGACCTACGAAGAA
GCCGGGCTGGCCAAGCGTCAGGGCGGTTTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCAACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTTTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAATCCGCTTGCC
CAGATGACCCTGGGCCCGAAGGTTCAGGCCCACGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A1Y6HAD5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	46.459	100	0.466