Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BEN31_RS04945 Genome accession   NZ_CP016784
Coordinates   928036..928329 (+) Length   97 a.a.
NCBI ID   WP_066030665.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 923036..933329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS04905 (BEN31_04905) - 923131..923769 (+) 639 WP_060596838.1 MBL fold metallo-hydrolase -
  BEN31_RS04910 (BEN31_04910) - 923818..924060 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  BEN31_RS04915 (BEN31_04915) - 924274..924654 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BEN31_RS04925 (BEN31_04925) - 924878..925750 (+) 873 WP_034661297.1 STAS domain-containing protein -
  BEN31_RS04935 (BEN31_04935) comGA 925928..926998 (+) 1071 WP_066030663.1 competence type IV pilus ATPase ComGA Machinery gene
  BEN31_RS04940 (BEN31_04940) comGB 926979..928019 (+) 1041 WP_066030664.1 competence type IV pilus assembly protein ComGB -
  BEN31_RS04945 (BEN31_04945) comGC 928036..928329 (+) 294 WP_066030665.1 competence type IV pilus major pilin ComGC Machinery gene
  BEN31_RS04950 (BEN31_04950) comGD 928322..928768 (+) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  BEN31_RS04955 (BEN31_04955) comGE 928752..929069 (+) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  BEN31_RS04960 (BEN31_04960) comGF 929008..929508 (+) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  BEN31_RS04965 (BEN31_04965) - 929505..929888 (+) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  BEN31_RS04970 (BEN31_04970) - 929947..930141 (+) 195 WP_024718846.1 YqzE family protein -
  BEN31_RS04975 (BEN31_04975) - 930175..930453 (-) 279 WP_223250494.1 DUF3889 domain-containing protein -
  BEN31_RS04980 (BEN31_04980) tapA 930753..931280 (+) 528 WP_060596834.1 amyloid fiber anchoring/assembly protein TapA -
  BEN31_RS04985 (BEN31_04985) sipW 931332..931904 (+) 573 WP_066031752.1 signal peptidase I SipW -
  BEN31_RS04990 (BEN31_04990) tasA 931962..932762 (+) 801 WP_034661283.1 biofilm matrix protein TasA -
  BEN31_RS04995 (BEN31_04995) sinR 932830..933165 (-) 336 WP_095285385.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10741.62 Da        Isoelectric Point: 6.9665

>NTDB_id=192170 BEN31_RS04945 WP_066030665.1 928036..928329(+) (comGC) [Bacillus pumilus strain PDSLzg-1]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQSKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKNGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=192170 BEN31_RS04945 WP_066030665.1 928036..928329(+) (comGC) [Bacillus pumilus strain PDSLzg-1]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATTGTCATGCTCGTGATTTCGATTCTTTTACTTATTACCATCCC
GAATATCACTCGTCACCACCAAACGATTCAATCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCATGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAATGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.391

94.845

0.402
  comGC Staphylococcus aureus N315

42.391

94.845

0.402

Multiple sequence alignment