Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BEN31_RS04935 | Genome accession | NZ_CP016784 |
| Coordinates | 925928..926998 (+) | Length | 356 a.a. |
| NCBI ID | WP_066030663.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain PDSLzg-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 920928..931998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEN31_RS04890 (BEN31_04890) | - | 921130..922383 (+) | 1254 | WP_060596687.1 | MFS transporter | - |
| BEN31_RS04895 (BEN31_04895) | - | 922461..922775 (+) | 315 | WP_034662003.1 | MTH1187 family thiamine-binding protein | - |
| BEN31_RS04900 (BEN31_04900) | - | 922800..922973 (-) | 174 | WP_003217333.1 | DUF2759 domain-containing protein | - |
| BEN31_RS04905 (BEN31_04905) | - | 923131..923769 (+) | 639 | WP_060596838.1 | MBL fold metallo-hydrolase | - |
| BEN31_RS04910 (BEN31_04910) | - | 923818..924060 (-) | 243 | WP_003217440.1 | DUF2626 domain-containing protein | - |
| BEN31_RS04915 (BEN31_04915) | - | 924274..924654 (+) | 381 | WP_007501232.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| BEN31_RS04925 (BEN31_04925) | - | 924878..925750 (+) | 873 | WP_034661297.1 | STAS domain-containing protein | - |
| BEN31_RS04935 (BEN31_04935) | comGA | 925928..926998 (+) | 1071 | WP_066030663.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BEN31_RS04940 (BEN31_04940) | comGB | 926979..928019 (+) | 1041 | WP_066030664.1 | competence type IV pilus assembly protein ComGB | - |
| BEN31_RS04945 (BEN31_04945) | comGC | 928036..928329 (+) | 294 | WP_066030665.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BEN31_RS04950 (BEN31_04950) | comGD | 928322..928768 (+) | 447 | WP_066030666.1 | competence type IV pilus minor pilin ComGD | - |
| BEN31_RS04955 (BEN31_04955) | comGE | 928752..929069 (+) | 318 | WP_034661291.1 | competence type IV pilus minor pilin ComGE | - |
| BEN31_RS04960 (BEN31_04960) | comGF | 929008..929508 (+) | 501 | WP_034661289.1 | competence type IV pilus minor pilin ComGF | - |
| BEN31_RS04965 (BEN31_04965) | - | 929505..929888 (+) | 384 | WP_034661288.1 | competence type IV pilus minor pilin ComGG | - |
| BEN31_RS04970 (BEN31_04970) | - | 929947..930141 (+) | 195 | WP_024718846.1 | YqzE family protein | - |
| BEN31_RS04975 (BEN31_04975) | - | 930175..930453 (-) | 279 | WP_223250494.1 | DUF3889 domain-containing protein | - |
| BEN31_RS04980 (BEN31_04980) | tapA | 930753..931280 (+) | 528 | WP_060596834.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BEN31_RS04985 (BEN31_04985) | sipW | 931332..931904 (+) | 573 | WP_066031752.1 | signal peptidase I SipW | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40325.66 Da Isoelectric Point: 8.8741
>NTDB_id=192169 BEN31_RS04935 WP_066030663.1 925928..926998(+) (comGA) [Bacillus pumilus strain PDSLzg-1]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASIRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDLIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFDVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRSVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASIRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDLIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFDVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRSVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL
Nucleotide
Download Length: 1071 bp
>NTDB_id=192169 BEN31_RS04935 WP_066030663.1 925928..926998(+) (comGA) [Bacillus pumilus strain PDSLzg-1]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
AAAAGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGGTCACTAGCT
GTGATGCTAAGAAGCGGCCAGGTGTTTATTCGGATGTCTACCTTACCAACTGTAAATGATGAGAGTTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCCATCAGATTATTATCATTTTTGA
ATCATTCGCATGGGCTGATTTTATTTACCGGTCCAACAAATTCAGGGAAAACAACAACCCTTTATTCATTAATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTGAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGTGCTATTTTAAGACATGATCCAGATCTGATTGTGCTAG
GAGAAATAAGAGATGCCGAAACGGCCCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACGCTTCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGATGTCACGATGAATGAACTCGAACAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGTCAGCTTTACTGTAAATTAAATCGAT
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTAGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
AAAAGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGGTCACTAGCT
GTGATGCTAAGAAGCGGCCAGGTGTTTATTCGGATGTCTACCTTACCAACTGTAAATGATGAGAGTTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCCATCAGATTATTATCATTTTTGA
ATCATTCGCATGGGCTGATTTTATTTACCGGTCCAACAAATTCAGGGAAAACAACAACCCTTTATTCATTAATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTGAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGTGCTATTTTAAGACATGATCCAGATCTGATTGTGCTAG
GAGAAATAAGAGATGCCGAAACGGCCCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACGCTTCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGATGTCACGATGAATGAACTCGAACAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGTCAGCTTTACTGTAAATTAAATCGAT
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTAGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
63.842 |
99.438 |
0.635 |