Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BEN31_RS04995 | Genome accession | NZ_CP016784 |
| Coordinates | 932830..933165 (-) | Length | 111 a.a. |
| NCBI ID | WP_095285385.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain PDSLzg-1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 927830..938165
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEN31_RS04945 (BEN31_04945) | comGC | 928036..928329 (+) | 294 | WP_066030665.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BEN31_RS04950 (BEN31_04950) | comGD | 928322..928768 (+) | 447 | WP_066030666.1 | competence type IV pilus minor pilin ComGD | - |
| BEN31_RS04955 (BEN31_04955) | comGE | 928752..929069 (+) | 318 | WP_034661291.1 | competence type IV pilus minor pilin ComGE | - |
| BEN31_RS04960 (BEN31_04960) | comGF | 929008..929508 (+) | 501 | WP_034661289.1 | competence type IV pilus minor pilin ComGF | - |
| BEN31_RS04965 (BEN31_04965) | - | 929505..929888 (+) | 384 | WP_034661288.1 | competence type IV pilus minor pilin ComGG | - |
| BEN31_RS04970 (BEN31_04970) | - | 929947..930141 (+) | 195 | WP_024718846.1 | YqzE family protein | - |
| BEN31_RS04975 (BEN31_04975) | - | 930175..930453 (-) | 279 | WP_223250494.1 | DUF3889 domain-containing protein | - |
| BEN31_RS04980 (BEN31_04980) | tapA | 930753..931280 (+) | 528 | WP_060596834.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BEN31_RS04985 (BEN31_04985) | sipW | 931332..931904 (+) | 573 | WP_066031752.1 | signal peptidase I SipW | - |
| BEN31_RS04990 (BEN31_04990) | tasA | 931962..932762 (+) | 801 | WP_034661283.1 | biofilm matrix protein TasA | - |
| BEN31_RS04995 (BEN31_04995) | sinR | 932830..933165 (-) | 336 | WP_095285385.1 | transcriptional regulator SinR | Regulator |
| BEN31_RS18910 | - | 933199..933363 (-) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| BEN31_RS05000 (BEN31_05000) | - | 933546..934343 (-) | 798 | WP_034661279.1 | YqhG family protein | - |
| BEN31_RS05005 (BEN31_05005) | - | 934358..936028 (-) | 1671 | WP_060596833.1 | DEAD/DEAH box helicase | - |
| BEN31_RS05010 (BEN31_05010) | gcvT | 936590..937687 (+) | 1098 | WP_066030667.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12959.51 Da Isoelectric Point: 4.9956
>NTDB_id=192171 BEN31_RS04995 WP_095285385.1 932830..933165(-) (sinR) [Bacillus pumilus strain PDSLzg-1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=192171 BEN31_RS04995 WP_095285385.1 932830..933165(-) (sinR) [Bacillus pumilus strain PDSLzg-1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |