Detailed information NTG0192084

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CA929_RS06820
• Genome accession: NZ_CP021277
• Coordinates: 1469179..1470189 (+)
• Length: 336 a.a.
• NCBI ID: WP_027227075.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain D-4058
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1464179..1475189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA929_RS06795	-	1466061..1466609 (+)	549	WP_027227079.1	cytochrome b	-
CA929_RS06800	-	1466641..1467630 (-)	990	WP_027227078.1	glycine cleavage system protein T	-
CA929_RS06805	-	1467756..1467995 (+)	240	WP_027221767.1	succinate dehydrogenase assembly factor 2	-
CA929_RS06815	-	1468480..1469043 (+)	564	WP_027227076.1	sigma-70 family RNA polymerase sigma factor	-
CA929_RS06820	ruvB	1469179..1470189 (+)	1011	WP_027227075.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CA929_RS06825	ybgC	1470193..1470588 (+)	396	WP_027227074.1	tol-pal system-associated acyl-CoA thioesterase	-
CA929_RS06830	tolQ	1470613..1471290 (+)	678	WP_080272004.1	protein TolQ	-
CA929_RS06835	tolR	1471299..1471754 (+)	456	WP_027227072.1	protein TolR	-
CA929_RS06840	tolA	1471751..1472749 (+)	999	WP_027227071.1	cell envelope integrity protein TolA	-
CA929_RS06845	tolB	1472755..1474014 (+)	1260	WP_027227070.1	Tol-Pal system beta propeller repeat protein TolB	-
CA929_RS06850	-	1474017..1474850 (+)	834	WP_027227069.1	S1/P1 nuclease	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37100.67 Da
• Isoelectric Point: 5.4546

>NTDB_id=192084 CA929_RS06820 WP_027227075.1 1469179..1470189(+) (ruvB) [Legionella pneumophila subsp. fraseri strain D-4058]
MLESDRLISSQSIVSEEAIDRAIRPLSLSEYVGQDSVSSQMQIFINAAKKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTRIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide

• Length: 1011 bp

>NTDB_id=192084 CA929_RS06820 WP_027227075.1 1469179..1470189(+) (ruvB) [Legionella pneumophila subsp. fraseri strain D-4058]
ATGCTCGAAAGTGATCGCCTAATCAGTAGTCAAAGTATTGTCTCGGAAGAAGCCATAGATAGAGCTATCAGGCCGCTTAG
TTTGAGTGAGTACGTAGGACAAGACTCTGTAAGTTCACAGATGCAGATATTTATCAATGCGGCAAAAAAGCGAAATGATC
CTTTAGACCATGTTCTTATTTTTGGCCCACCTGGACTTGGCAAAACTACTTTAGCGAATATCATAGCTCACGAAATGGGA
GTTAATATCAGACAAACTTCTGGGCCAGTGATTGAGCGAGCCGGTGATATTGCAGCTATATTGACGAATTTACAACAAAA
TGATGTACTATTTATTGACGAAATTCACAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCTATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCCGCAGCACGATCTATTAAATTAGAGTTACCTCCTTTTACATTAATTGGAGCT
ACAACAAGAGCAGGATTACTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGATTGGAGTATTATTCTGTTGA
TTCGCTTACCCGGATTGTAGCACGCTCTGCTCATTTGCTTGGTGTCCCTACAAAACCTGAAGGAGCCAGAGAAATTGCAT
TACGTTCCAGAGGAACACCACGCATCGCCAATCGCCTGTTAAGAAGAGTAAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCTCAACAAGCATTGGAAATGCTTGAAGTGGATCAACATGGATTCGATTTAATGGATAGAAA
ATTATTGTTAGCAGTGATAGAGCATTTCAATGGCGGTCCAGTTGGTATAGATAGCATTGCAGCTGCTATTGGTGAAGAAA
AAGGAACTATAGAGGACGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCT
ACTTCGAAAGCTTATCAACATTTTGGTTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.976	97.619	0.595
ruvB	Streptococcus pneumoniae TIGR4	57.273	98.214	0.563
ruvB	Streptococcus pneumoniae R6	57.273	98.214	0.563
ruvB	Streptococcus pneumoniae D39	57.273	98.214	0.563
ruvB	Helicobacter pylori 26695	53.106	95.833	0.509
ruvB	Synechocystis sp. PCC 6803	53.016	93.75	0.497