Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BEK99_RS13225 Genome accession   NZ_CP016760
Coordinates   1057137..1057475 (+) Length   112 a.a.
NCBI ID   WP_156768896.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1052137..1062475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEK99_RS05275 (BEK99_05275) yqeK 1052335..1052919 (+) 585 WP_015900462.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BEK99_RS05280 (BEK99_05280) rsfS 1052920..1053270 (+) 351 WP_046099248.1 ribosome silencing factor -
  BEK99_RS05285 (BEK99_05285) - 1053273..1053989 (+) 717 WP_046099249.1 class I SAM-dependent DNA methyltransferase -
  BEK99_RS05290 (BEK99_05290) - 1054038..1054706 (+) 669 WP_015900459.1 ComEA family DNA-binding protein -
  BEK99_RS05295 (BEK99_05295) - 1054781..1055242 (+) 462 WP_046099251.1 ComE operon protein 2 -
  BEK99_RS05300 (BEK99_05300) - 1055436..1057085 (+) 1650 WP_237340564.1 ComEC/Rec2 family competence protein -
  BEK99_RS13225 comEC 1057137..1057475 (+) 339 WP_156768896.1 ComEC/Rec2 family competence protein Machinery gene
  BEK99_RS05305 (BEK99_05305) holA 1057549..1058524 (+) 976 Protein_1033 DNA polymerase III subunit delta -
  BEK99_RS05310 (BEK99_05310) rpsT 1058557..1058808 (-) 252 WP_046099252.1 30S ribosomal protein S20 -
  BEK99_RS05315 (BEK99_05315) lepA 1059073..1060897 (+) 1825 Protein_1035 translation elongation factor 4 -
  BEK99_RS05320 (BEK99_05320) hemW 1060966..1062087 (+) 1122 WP_065865436.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12639.42 Da        Isoelectric Point: 10.1713

>NTDB_id=191949 BEK99_RS13225 WP_156768896.1 1057137..1057475(+) (comEC) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
MAIIKTRKYNILTTGDATVKNESKLLANYLIPRIDILKVGHHGSKTSSNEKFINSIHPHYSVISSGKNNAYKLPNKEVIG
RLNKVNSQIYNTQKNGQITFNLDDEIQVLTEQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=191949 BEK99_RS13225 WP_156768896.1 1057137..1057475(+) (comEC) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
ATGGCAATCATTAAAACACGTAAATATAATATACTAACCACTGGTGATGCAACTGTTAAAAATGAATCAAAATTATTAGC
TAATTACTTAATTCCTAGAATTGATATTTTGAAAGTAGGCCATCATGGCAGTAAAACAAGTTCTAATGAAAAGTTTATAA
ATAGTATCCATCCTCATTATAGCGTTATTTCGAGTGGTAAAAACAACGCATATAAACTTCCAAATAAAGAAGTAATAGGC
CGTCTAAATAAAGTAAATTCTCAAATATATAATACTCAAAAAAATGGACAGATAACATTTAATCTAGATGATGAAATACA
AGTATTAACAGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

60.204

87.5

0.527
  comEC Staphylococcus aureus MW2

60.204

87.5

0.527
  comEC Lactococcus lactis subsp. cremoris KW2

47.727

78.571

0.375
  rec2 Haemophilus influenzae Rd KW20

41.176

91.071

0.375

Multiple sequence alignment