Detailed information NTG0191606

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CA930_RS07685
• Genome accession: NZ_CP021263
• Coordinates: 1700119..1701129 (-)
• Length: 336 a.a.
• NCBI ID: WP_027227075.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain D-3137
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1695119..1706129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA930_RS07655	-	1695458..1696291 (-)	834	WP_027227069.1	S1/P1 nuclease	-
CA930_RS07660	tolB	1696294..1697553 (-)	1260	WP_027227070.1	Tol-Pal system beta propeller repeat protein TolB	-
CA930_RS07665	tolA	1697559..1698557 (-)	999	WP_027227071.1	cell envelope integrity protein TolA	-
CA930_RS07670	tolR	1698554..1699009 (-)	456	WP_027227072.1	protein TolR	-
CA930_RS07675	tolQ	1699018..1699695 (-)	678	WP_080272004.1	protein TolQ	-
CA930_RS07680	ybgC	1699720..1700115 (-)	396	WP_027227074.1	tol-pal system-associated acyl-CoA thioesterase	-
CA930_RS07685	ruvB	1700119..1701129 (-)	1011	WP_027227075.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CA930_RS07690	-	1701265..1701828 (-)	564	WP_027227076.1	sigma-70 family RNA polymerase sigma factor	-
CA930_RS07700	-	1702313..1702552 (-)	240	WP_027221767.1	succinate dehydrogenase assembly factor 2	-
CA930_RS07705	-	1702678..1703667 (+)	990	WP_027227078.1	glycine cleavage system protein T	-
CA930_RS07710	-	1703699..1704247 (-)	549	WP_027227079.1	cytochrome b	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37100.67 Da
• Isoelectric Point: 5.4546

>NTDB_id=191606 CA930_RS07685 WP_027227075.1 1700119..1701129(-) (ruvB) [Legionella pneumophila subsp. fraseri strain D-3137]
MLESDRLISSQSIVSEEAIDRAIRPLSLSEYVGQDSVSSQMQIFINAAKKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTRIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide

• Length: 1011 bp

>NTDB_id=191606 CA930_RS07685 WP_027227075.1 1700119..1701129(-) (ruvB) [Legionella pneumophila subsp. fraseri strain D-3137]
ATGCTCGAAAGTGATCGCCTAATCAGTAGTCAAAGTATTGTCTCGGAAGAAGCCATAGATAGAGCTATCAGGCCGCTTAG
TTTGAGTGAGTACGTAGGACAAGACTCTGTAAGTTCACAGATGCAGATATTTATCAATGCGGCAAAAAAGCGAAATGATC
CTTTAGACCATGTTCTTATTTTTGGCCCACCTGGACTTGGCAAAACTACTTTAGCGAATATCATAGCTCACGAAATGGGA
GTTAATATCAGACAAACTTCTGGGCCAGTGATTGAGCGAGCCGGTGATATTGCAGCTATATTGACGAATTTACAACAAAA
TGATGTACTATTTATTGACGAAATTCACAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCTATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCCGCAGCACGATCTATTAAATTAGAGTTACCTCCTTTTACATTAATTGGAGCT
ACAACAAGAGCAGGATTACTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGATTGGAGTATTATTCTGTTGA
TTCGCTTACCCGGATTGTAGCACGCTCTGCTCATTTGCTTGGTGTCCCTACAAAACCTGAAGGAGCCAGAGAAATTGCAT
TACGTTCCAGAGGAACACCACGCATCGCCAATCGCCTGTTAAGAAGAGTAAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCTCAACAAGCATTGGAAATGCTTGAAGTGGATCAACATGGATTCGATTTAATGGATAGAAA
ATTATTGTTAGCAGTGATAGAGCATTTCAATGGCGGTCCAGTTGGTATAGATAGCATTGCAGCTGCTATTGGTGAAGAAA
AAGGAACTATAGAGGACGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCT
ACTTCGAAAGCTTATCAACATTTTGGTTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.976	97.619	0.595
ruvB	Streptococcus pneumoniae TIGR4	57.273	98.214	0.563
ruvB	Streptococcus pneumoniae R6	57.273	98.214	0.563
ruvB	Streptococcus pneumoniae D39	57.273	98.214	0.563
ruvB	Helicobacter pylori 26695	53.106	95.833	0.509
ruvB	Synechocystis sp. PCC 6803	53.016	93.75	0.497