Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6M04_RS02130 Genome accession   NZ_CP016668
Coordinates   398549..399022 (+) Length   157 a.a.
NCBI ID   WP_002248276.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393549..404022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M04_RS02105 (A6M04_02105) dnaB 394164..395570 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6M04_RS02110 (A6M04_02110) pilH 395725..396402 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6M04_RS02115 (A6M04_02115) pilV 396426..397037 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6M04_RS02120 (A6M04_02120) pilJ 397034..397972 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6M04_RS02125 (A6M04_02125) pilK 397951..398544 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6M04_RS02130 (A6M04_02130) pilX 398549..399022 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6M04_RS02135 (A6M04_02135) - 400926..401354 (-) 429 Protein_407 AzlC family ABC transporter permease -
  A6M04_RS02140 (A6M04_02140) dut 401497..401949 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6M04_RS02145 (A6M04_02145) dapC 402025..403212 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6M04_RS14615 - 403300..403425 (+) 126 Protein_410 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17528.29 Da        Isoelectric Point: 9.4344

>NTDB_id=191055 A6M04_RS02130 WP_002248276.1 398549..399022(+) (pilX) [Neisseria meningitidis strain M25472]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=191055 A6M04_RS02130 WP_002248276.1 398549..399022(+) (pilX) [Neisseria meningitidis strain M25472]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

99.363

100

0.994
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment