Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6M04_RS02120 Genome accession   NZ_CP016668
Coordinates   397034..397972 (+) Length   312 a.a.
NCBI ID   WP_002248274.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25472     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392034..402972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M04_RS02095 (A6M04_02095) - 392333..392842 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6M04_RS02100 (A6M04_02100) - 393414..394001 (-) 588 WP_002220670.1 superoxide dismutase -
  A6M04_RS02105 (A6M04_02105) dnaB 394164..395570 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6M04_RS02110 (A6M04_02110) pilH 395725..396402 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6M04_RS02115 (A6M04_02115) pilV 396426..397037 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6M04_RS02120 (A6M04_02120) pilJ 397034..397972 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6M04_RS02125 (A6M04_02125) pilK 397951..398544 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6M04_RS02130 (A6M04_02130) pilX 398549..399022 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6M04_RS02135 (A6M04_02135) - 400926..401354 (-) 429 Protein_407 AzlC family ABC transporter permease -
  A6M04_RS02140 (A6M04_02140) dut 401497..401949 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34374.05 Da        Isoelectric Point: 8.9869

>NTDB_id=191053 A6M04_RS02120 WP_002248274.1 397034..397972(+) (pilJ) [Neisseria meningitidis strain M25472]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=191053 A6M04_RS02120 WP_002248274.1 397034..397972(+) (pilJ) [Neisseria meningitidis strain M25472]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.063

100

0.811

Multiple sequence alignment