Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A6M04_RS02115 Genome accession   NZ_CP016668
Coordinates   396426..397037 (+) Length   203 a.a.
NCBI ID   WP_002248273.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25472     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 391426..402037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M04_RS14610 - 391517..391624 (+) 108 Protein_397 IS5/IS1182 family transposase -
  A6M04_RS02090 (A6M04_02090) - 391669..392001 (+) 333 WP_002226445.1 hypothetical protein -
  A6M04_RS02095 (A6M04_02095) - 392333..392842 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6M04_RS02100 (A6M04_02100) - 393414..394001 (-) 588 WP_002220670.1 superoxide dismutase -
  A6M04_RS02105 (A6M04_02105) dnaB 394164..395570 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6M04_RS02110 (A6M04_02110) pilH 395725..396402 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6M04_RS02115 (A6M04_02115) pilV 396426..397037 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6M04_RS02120 (A6M04_02120) pilJ 397034..397972 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6M04_RS02125 (A6M04_02125) pilK 397951..398544 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6M04_RS02130 (A6M04_02130) pilX 398549..399022 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6M04_RS02135 (A6M04_02135) - 400926..401354 (-) 429 Protein_407 AzlC family ABC transporter permease -
  A6M04_RS02140 (A6M04_02140) dut 401497..401949 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22100.14 Da        Isoelectric Point: 4.8335

>NTDB_id=191052 A6M04_RS02115 WP_002248273.1 396426..397037(+) (pilV) [Neisseria meningitidis strain M25472]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNHTLSAVDGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIRYAVCKDSLGAAPTLSAGSTFSPNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=191052 A6M04_RS02115 WP_002248273.1 396426..397037(+) (pilV) [Neisseria meningitidis strain M25472]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCGTTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTCCAAATTGCGATAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

91.304

100

0.931
  pilI Neisseria gonorrhoeae MS11

82.266

100

0.823
  pilV Neisseria gonorrhoeae MS11

82.266

100

0.823

Multiple sequence alignment