Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   B9N48_RS13835 Genome accession   NZ_CP021169
Coordinates   2628841..2629536 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2623841..2634536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS13810 minD 2624777..2625583 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  B9N48_RS13815 minC 2625585..2626265 (-) 681 WP_029318187.1 septum site-determining protein MinC -
  B9N48_RS13820 mreD 2626318..2626836 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  B9N48_RS13825 mreC 2626833..2627705 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  B9N48_RS13830 mreB 2627736..2628749 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  B9N48_RS13835 ysxA/radC 2628841..2629536 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  B9N48_RS13840 maf 2629573..2630142 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  B9N48_RS13845 spoIIB 2630295..2631293 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  B9N48_RS13850 comC 2631427..2632173 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  B9N48_RS13855 folC 2632314..2633606 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=190810 B9N48_RS13835 WP_014480455.1 2628841..2629536(-) (ysxA/radC) [Bacillus subtilis strain TLO3]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=190810 B9N48_RS13835 WP_014480455.1 2628841..2629536(-) (ysxA/radC) [Bacillus subtilis strain TLO3]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATTCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment