Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L46_RS04575 Genome accession   NZ_CP016660
Coordinates   883885..884481 (-) Length   198 a.a.
NCBI ID   WP_002258539.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22804     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878885..889481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L46_RS04550 (A6L46_04550) dut 879290..879742 (-) 453 WP_002258542.1 dUTP diphosphatase -
  A6L46_RS04555 (A6L46_04555) - 879887..880315 (+) 429 Protein_830 AzlC family ABC transporter permease -
  A6L46_RS12110 - 881196..881947 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L46_RS04570 (A6L46_04570) pilX 883407..883880 (-) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L46_RS04575 (A6L46_04575) pilK 883885..884481 (-) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L46_RS04580 (A6L46_04580) pilJ 884460..885401 (-) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L46_RS04585 (A6L46_04585) pilV 885398..886012 (-) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L46_RS04590 (A6L46_04590) pilH 886042..886707 (-) 666 WP_065826209.1 GspH/FimT family pseudopilin Machinery gene
  A6L46_RS04595 (A6L46_04595) dnaB 887016..888422 (-) 1407 WP_002220671.1 replicative DNA helicase -
  A6L46_RS04600 (A6L46_04600) - 888585..889172 (+) 588 WP_002258535.1 superoxide dismutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21830.74 Da        Isoelectric Point: 5.3906

>NTDB_id=190684 A6L46_RS04575 WP_002258539.1 883885..884481(-) (pilK) [Neisseria meningitidis strain M22804]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQDNPTVEAVKRSCPANSTDLCIDKKGMKYKKGTRSVSEMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=190684 A6L46_RS04575 WP_002258539.1 883885..884481(-) (pilK) [Neisseria meningitidis strain M22804]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGACAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCGAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.879

Multiple sequence alignment