Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L46_RS04590 Genome accession   NZ_CP016660
Coordinates   886042..886707 (-) Length   221 a.a.
NCBI ID   WP_065826209.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22804     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881042..891707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L46_RS12110 - 881196..881947 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L46_RS04570 (A6L46_04570) pilX 883407..883880 (-) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L46_RS04575 (A6L46_04575) pilK 883885..884481 (-) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L46_RS04580 (A6L46_04580) pilJ 884460..885401 (-) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L46_RS04585 (A6L46_04585) pilV 885398..886012 (-) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L46_RS04590 (A6L46_04590) pilH 886042..886707 (-) 666 WP_065826209.1 GspH/FimT family pseudopilin Machinery gene
  A6L46_RS04595 (A6L46_04595) dnaB 887016..888422 (-) 1407 WP_002220671.1 replicative DNA helicase -
  A6L46_RS04600 (A6L46_04600) - 888585..889172 (+) 588 WP_002258535.1 superoxide dismutase -
  A6L46_RS04605 (A6L46_04605) - 890423..890932 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L46_RS04610 (A6L46_04610) - 891264..891596 (-) 333 WP_002213854.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24722.25 Da        Isoelectric Point: 9.7067

>NTDB_id=190687 A6L46_RS04590 WP_065826209.1 886042..886707(-) (pilH) [Neisseria meningitidis strain M22804]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDFGKKGQGMLAFGDKNGNKTYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QYLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNNRRTVCQYK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=190687 A6L46_RS04590 WP_065826209.1 886042..886707(-) (pilH) [Neisseria meningitidis strain M22804]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGTATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACAATA
GGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.364

99.548

0.86

Multiple sequence alignment