Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CAY59_RS12945 Genome accession   NZ_CP021145
Coordinates   2727273..2730653 (-) Length   1126 a.a.
NCBI ID   WP_172840962.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2722273..2735653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS12920 (CAY59_12775) - 2722556..2722984 (+) 429 WP_005382194.1 HIT domain-containing protein -
  CAY59_RS12925 (CAY59_12780) - 2723135..2723656 (+) 522 WP_045455167.1 YqhA family protein -
  CAY59_RS12930 (CAY59_12785) - 2723766..2723996 (-) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  CAY59_RS12935 (CAY59_12790) feoB 2723993..2726269 (-) 2277 WP_079401084.1 Fe(2+) transporter permease subunit FeoB -
  CAY59_RS12940 (CAY59_12795) - 2726269..2726496 (-) 228 WP_005426705.1 FeoA family protein -
  CAY59_RS12945 (CAY59_12800) tfoS 2727273..2730653 (-) 3381 WP_172840962.1 AraC family transcriptional regulator Regulator
  CAY59_RS12950 (CAY59_12805) znuA 2730866..2731747 (-) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  CAY59_RS12955 (CAY59_12810) znuC 2731826..2732614 (+) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  CAY59_RS12960 (CAY59_12815) znuB 2732607..2733392 (+) 786 WP_043883016.1 zinc ABC transporter permease subunit ZnuB -
  CAY59_RS12965 (CAY59_12820) sucD 2733525..2734397 (-) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  CAY59_RS12970 (CAY59_12825) sucC 2734397..2735564 (-) 1168 Protein_2369 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126915.29 Da        Isoelectric Point: 6.0319

>NTDB_id=190685 CAY59_RS12945 WP_172840962.1 2727273..2730653(-) (tfoS) [Vibrio campbellii strain LA16-V1]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKTIDHITADGPNRLWVSSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=190685 CAY59_RS12945 WP_172840962.1 2727273..2730653(-) (tfoS) [Vibrio campbellii strain LA16-V1]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGCCAAACCACATTGCCAAAATCCGGTAGCTTTCTCAGAAAC
AAAGTAGAGCAGCTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTTTATCAAACTTACCCGAACCA
AGAACGTCGTTTAGTCTTTAGCCTCAACCCAGGCTCTCAGATCCGTAAGATTGGTTCATCCGGAAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCATTGGCGACAACTTCAGGCGTATA
CCTATCAGAAGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTTGGTACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCCGGCAAGCCTGTTATTAGAATC
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCTAGCACCAAAATTTACTCGT
TGCTGAACGACAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAGCAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTAAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGGTATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAATCAGGCTATGAGAAATTTTGGCAGTGAATGGTTAG
TGAGTAAGTTCTTACCTGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCGAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTGAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCAGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCAGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGCG
GCTTCAATGACCCATCCTACTTTAGTCAGAAGTTTAAATTACACTTCGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.485

100

0.395

Multiple sequence alignment