Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L46_RS04580 Genome accession   NZ_CP016660
Coordinates   884460..885401 (-) Length   313 a.a.
NCBI ID   WP_002258538.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22804     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 879460..890401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L46_RS04555 (A6L46_04555) - 879887..880315 (+) 429 Protein_830 AzlC family ABC transporter permease -
  A6L46_RS12110 - 881196..881947 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L46_RS04570 (A6L46_04570) pilX 883407..883880 (-) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L46_RS04575 (A6L46_04575) pilK 883885..884481 (-) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L46_RS04580 (A6L46_04580) pilJ 884460..885401 (-) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L46_RS04585 (A6L46_04585) pilV 885398..886012 (-) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L46_RS04590 (A6L46_04590) pilH 886042..886707 (-) 666 WP_065826209.1 GspH/FimT family pseudopilin Machinery gene
  A6L46_RS04595 (A6L46_04595) dnaB 887016..888422 (-) 1407 WP_002220671.1 replicative DNA helicase -
  A6L46_RS04600 (A6L46_04600) - 888585..889172 (+) 588 WP_002258535.1 superoxide dismutase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34486.22 Da        Isoelectric Point: 9.2157

>NTDB_id=190685 A6L46_RS04580 WP_002258538.1 884460..885401(-) (pilJ) [Neisseria meningitidis strain M22804]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHLATDVVSDVAQKNRLFSLKRNSTNKLIPITESSNINYQNFFQVGSALIFQYGIDDVNASAATTVVSSCAAILK
PGKQILTLENVKKELNIPDTDNRQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRHMKVRYIYV
SGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=190685 A6L46_RS04580 WP_002258538.1 884460..885401(-) (pilJ) [Neisseria meningitidis strain M22804]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCTTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATTGAAA
CCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAATATTCCGGATACGGATAACAGGCAAAATGGCAA
TATTGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACATATGAAAGTGCGGTATATCTATGTT
TCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

84.81

100

0.856

Multiple sequence alignment