Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CAY59_RS11980 Genome accession   NZ_CP021145
Coordinates   2513960..2514964 (-) Length   334 a.a.
NCBI ID   WP_009698277.1    Uniprot ID   K5U0H4
Organism   Vibrio campbellii strain LA16-V1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2508960..2519964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS11950 (CAY59_11825) tolQ 2509063..2509761 (-) 699 WP_005426224.1 protein TolQ -
  CAY59_RS11955 (CAY59_11830) ybgC 2509751..2510171 (-) 421 Protein_2178 tol-pal system-associated acyl-CoA thioesterase -
  CAY59_RS11960 (CAY59_11835) ybgE 2510343..2510645 (-) 303 WP_012127446.1 cyd operon protein YbgE -
  CAY59_RS11965 (CAY59_11840) cydX 2510638..2510745 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  CAY59_RS11970 (CAY59_11845) cydB 2510758..2511894 (-) 1137 WP_038889166.1 cytochrome d ubiquinol oxidase subunit II -
  CAY59_RS11975 (CAY59_11850) cydA 2511912..2513498 (-) 1587 WP_038889167.1 cytochrome ubiquinol oxidase subunit I -
  CAY59_RS11980 ruvB 2513960..2514964 (-) 1005 WP_009698277.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CAY59_RS11985 ruvA 2514986..2515600 (-) 615 WP_086369570.1 Holliday junction branch migration protein RuvA -
  CAY59_RS11990 (CAY59_11860) - 2515679..2517130 (-) 1452 WP_086369571.1 methyl-accepting chemotaxis protein -
  CAY59_RS11995 (CAY59_11865) ruvC 2517253..2517774 (-) 522 WP_009842728.1 crossover junction endodeoxyribonuclease RuvC -
  CAY59_RS12000 (CAY59_11870) aspS 2517874..2519652 (-) 1779 WP_005426152.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37263.60 Da        Isoelectric Point: 4.6668

>NTDB_id=190675 CAY59_RS11980 WP_009698277.1 2513960..2514964(-) (ruvB) [Vibrio campbellii strain LA16-V1]
MIEADRLIAPENPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVKDLQDIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADTADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=190675 CAY59_RS11980 WP_009698277.1 2513960..2514964(-) (ruvB) [Vibrio campbellii strain LA16-V1]
ATGATTGAAGCCGATCGTTTAATCGCGCCAGAGAATCCTTCGTTTCGTGATGAAGATGTCATCGACCGTGCGATTCGTCC
TAAGAAGCTGGCGGATTACCAAGGTCAGGATCACGTGCGTGATCAGATGGAGATTTTCATCAAAGCCGCTCAATTGCGAA
ATGAAGCGCTCGACCACCTTTTGATATTTGGTCCTCCAGGTTTGGGTAAAACCACACTTGCGAATATCGTTGCCAATGAG
ATGGAAGTGAACATTCGTACCACTTCAGGCCCTGTACTCGAGAAAGCAGGGGACTTAGCGGCACTATTAACCAACTTAGA
AGAAAACGATGTGTTGTTCATTGATGAGATCCACCGCTTAAGCCCGATGGTTGAAGAGGTGTTGTATCCAGCGATGGAAG
ACTACCAGTTAGACATCATGATTGGTGAAGGTCCAGCGGCGCGCTCTATCAAAATTGATCTACCACCTTTCACTTTGATC
GGTGCAACGACGCGTGCAGGCTCTTTGACTTCGCCACTTCGAGACCGTTTTGGTATTACTCAGCGTCTTGAATACTACAA
AGTGAAAGACCTGCAAGATATCGTTCAGCGCAGTGCTGACTGCTTGGGTTTGTCTATGGAGTCGGAAGGGGCGTTAGAAG
TTGCTCGCCGTGCTCGTGGCACGCCACGTATTGCTAACCGATTGCTACGCCGAGTTCGTGACTATGCGGAAGTAAAAGGC
AACGGTCATATTTGTGCTGATACCGCAGACAAGGCATTGAACATGCTCGATGTCGATGCCGAAGGTTTTGATTATATGGA
CCGTAAGCTGCTGTTAGCGATCATGGAGAAGTTTGGCGGTGGGCCTGTTGGTTTGGACAACATGGCTGCGGCGATCGGTG
AAGAGAAAGACACCATCGAAGACGTTCTTGAACCATATCTAATCCAACAAGGCTATTTGCAACGCACTCCGCGTGGTAGA
ATCGCCACCGATCGTGCTTATTTGCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5U0H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

59.133

96.707

0.572
  ruvB Streptococcus pneumoniae R6

59.133

96.707

0.572
  ruvB Streptococcus pneumoniae D39

59.133

96.707

0.572
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment