Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CAH07_RS07050 Genome accession   NZ_CP021123
Coordinates   1380197..1380892 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SEM-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375197..1385892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS07030 (CAH07_06975) folC 1376125..1377417 (+) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CAH07_RS07035 (CAH07_06980) comC 1377560..1378306 (+) 747 WP_101172351.1 A24 family peptidase Machinery gene
  CAH07_RS07040 (CAH07_06985) spoIIB 1378440..1379438 (+) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  CAH07_RS07045 (CAH07_06990) maf 1379591..1380160 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  CAH07_RS07050 (CAH07_06995) ysxA/radC 1380197..1380892 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  CAH07_RS07055 (CAH07_07000) mreB 1380984..1381997 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  CAH07_RS07060 (CAH07_07005) mreC 1382028..1382900 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  CAH07_RS07065 (CAH07_07010) mreD 1382897..1383415 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  CAH07_RS07070 (CAH07_07015) minC 1383468..1384148 (+) 681 WP_029318187.1 septum site-determining protein MinC -
  CAH07_RS07075 (CAH07_07020) minD 1384150..1384956 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=190511 CAH07_RS07050 WP_003246034.1 1380197..1380892(+) (ysxA/radC) [Bacillus subtilis strain SEM-9]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=190511 CAH07_RS07050 WP_003246034.1 1380197..1380892(+) (ysxA/radC) [Bacillus subtilis strain SEM-9]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424