Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilX   Type   Machinery gene
Locus tag   A6L47_RS02090 Genome accession   NZ_CP016647
Coordinates   381764..382237 (+) Length   157 a.a.
NCBI ID   WP_002258540.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22809     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 376764..387237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L47_RS02065 (A6L47_02065) dnaB 377222..378628 (+) 1407 WP_002220671.1 replicative DNA helicase -
  A6L47_RS02070 (A6L47_02070) pilH 378937..379602 (+) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L47_RS02075 (A6L47_02075) pilV 379632..380246 (+) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L47_RS02080 (A6L47_02080) pilJ 380243..381184 (+) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L47_RS02085 (A6L47_02085) pilK 381163..381759 (+) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L47_RS02090 (A6L47_02090) pilX 381764..382237 (+) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L47_RS02105 (A6L47_02105) - 385639..386067 (-) 429 Protein_401 AzlC family ABC transporter permease -
  A6L47_RS02110 (A6L47_02110) dut 386212..386664 (+) 453 WP_002258542.1 dUTP diphosphatase -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17449.24 Da        Isoelectric Point: 9.8236

>NTDB_id=190067 A6L47_RS02090 WP_002258540.1 381764..382237(+) (pilX) [Neisseria meningitidis strain M22809]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDKEKSRAYRLVGVPKAGTGYTLSAWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=190067 A6L47_RS02090 WP_002258540.1 381764..382237(+) (pilX) [Neisseria meningitidis strain M22809]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGCATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

90.446

100

0.904

  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892


Multiple sequence alignment