Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   A6L47_RS02075 Genome accession   NZ_CP016647
Coordinates   379632..380246 (+) Length   204 a.a.
NCBI ID   WP_002258537.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22809     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 374632..385246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L47_RS02055 (A6L47_02055) - 374712..375221 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L47_RS02060 (A6L47_02060) - 376472..377059 (-) 588 WP_002258535.1 superoxide dismutase -
  A6L47_RS02065 (A6L47_02065) dnaB 377222..378628 (+) 1407 WP_002220671.1 replicative DNA helicase -
  A6L47_RS02070 (A6L47_02070) pilH 378937..379602 (+) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L47_RS02075 (A6L47_02075) pilV 379632..380246 (+) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L47_RS02080 (A6L47_02080) pilJ 380243..381184 (+) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L47_RS02085 (A6L47_02085) pilK 381163..381759 (+) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L47_RS02090 (A6L47_02090) pilX 381764..382237 (+) 474 WP_002258540.1 PilX family type IV pilin Machinery gene

Sequence


Protein


Download         Length: 204 a.a.        Molecular weight: 22147.10 Da        Isoelectric Point: 4.9586

>NTDB_id=190064 A6L47_RS02075 WP_002258537.1 379632..380246(+) (pilV) [Neisseria meningitidis strain M22809]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHHTLSVVDGDFQVDAIKTKTQLAEAQLKRFSYELKNALPDAAAIYYAICKDSSGVAPTLSAGSTFSSNCDASA
NGDTLIKVLWVNDSAGDSDIARTNLETNGNNIVYTYQARVGGRE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=190064 A6L47_RS02075 WP_002258537.1 379632..380246(+) (pilV) [Neisseria meningitidis strain M22809]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTTCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCAGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATCATACACTATCAGTTGTGGATGGCGATTTTCAGGTTGATGCCATAAAAACTAAGAC
GCAGTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCTATTACG
CCATCTGCAAGGATTCGTCGGGTGTTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTTCAAATTGCGATGCTAGTGCA
AATGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGAC
GAACGGCAACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

90.338

100

0.917

  pilI Neisseria gonorrhoeae MS11

83.333

100

0.833

  pilV Neisseria gonorrhoeae MS11

83.333

100

0.833


Multiple sequence alignment