Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L47_RS02080 Genome accession   NZ_CP016647
Coordinates   380243..381184 (+) Length   313 a.a.
NCBI ID   WP_002258538.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22809     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375243..386184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L47_RS02060 (A6L47_02060) - 376472..377059 (-) 588 WP_002258535.1 superoxide dismutase -
  A6L47_RS02065 (A6L47_02065) dnaB 377222..378628 (+) 1407 WP_002220671.1 replicative DNA helicase -
  A6L47_RS02070 (A6L47_02070) pilH 378937..379602 (+) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L47_RS02075 (A6L47_02075) pilV 379632..380246 (+) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L47_RS02080 (A6L47_02080) pilJ 380243..381184 (+) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L47_RS02085 (A6L47_02085) pilK 381163..381759 (+) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L47_RS02090 (A6L47_02090) pilX 381764..382237 (+) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L47_RS02105 (A6L47_02105) - 385639..386067 (-) 429 Protein_401 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34486.22 Da        Isoelectric Point: 9.2157

>NTDB_id=190065 A6L47_RS02080 WP_002258538.1 380243..381184(+) (pilJ) [Neisseria meningitidis strain M22809]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHLATDVVSDVAQKNRLFSLKRNSTNKLIPITESSNINYQNFFQVGSALIFQYGIDDVNASAATTVVSSCAAILK
PGKQILTLENVKKELNIPDTDNRQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRHMKVRYIYV
SGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=190065 A6L47_RS02080 WP_002258538.1 380243..381184(+) (pilJ) [Neisseria meningitidis strain M22809]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCTTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATTGAAA
CCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAATATTCCGGATACGGATAACAGGCAAAATGGCAA
TATTGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACATATGAAAGTGCGGTATATCTATGTT
TCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

84.81

100

0.856

Multiple sequence alignment