Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   A6L49_RS06305 Genome accession   NZ_CP016646
Coordinates   1206269..1207294 (-) Length   341 a.a.
NCBI ID   WP_002258504.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22819     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1201269..1212294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L49_RS06285 (A6L49_06285) - 1202750..1203376 (-) 627 WP_002234733.1 phosphoribosylanthranilate isomerase -
  A6L49_RS06290 (A6L49_06290) greB 1203435..1203926 (-) 492 WP_002258501.1 transcription elongation factor GreB -
  A6L49_RS06295 (A6L49_06295) purF 1204026..1205570 (-) 1545 WP_002258502.1 amidophosphoribosyltransferase -
  A6L49_RS06300 (A6L49_06300) - 1205779..1206276 (-) 498 WP_002258503.1 CvpA family protein -
  A6L49_RS06305 (A6L49_06305) tpc 1206269..1207294 (-) 1026 WP_002258504.1 cell division protein FtsN Machinery gene
  A6L49_RS06310 (A6L49_06310) folC 1207307..1208581 (-) 1275 WP_002258505.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  A6L49_RS06315 (A6L49_06315) - 1208612..1209058 (-) 447 WP_002258506.1 protein YgfX -
  A6L49_RS06320 (A6L49_06320) - 1209063..1209422 (-) 360 WP_002258507.1 hypothetical protein -
  A6L49_RS06325 (A6L49_06325) - 1209495..1210223 (-) 729 WP_002258508.1 amino acid ABC transporter ATP-binding protein -
  A6L49_RS06330 (A6L49_06330) rsmA 1210396..1211175 (-) 780 WP_002258509.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  A6L49_RS06335 (A6L49_06335) - 1211372..1212061 (+) 690 WP_002258510.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 341 a.a.        Molecular weight: 36473.91 Da        Isoelectric Point: 10.1579

>NTDB_id=190032 A6L49_RS06305 WP_002258504.1 1206269..1207294(-) (tpc) [Neisseria meningitidis strain M22819]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLESSAKPKQEEAAEKPQQAETAKTAPKQAKQRAAEKVPATADS
TDTVAVEKPKRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDR
SDGKKHETAQKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNAR
DAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=190032 A6L49_RS06305 WP_002258504.1 1206269..1207294(-) (tpc) [Neisseria meningitidis strain M22819]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAATATCAAAGGCTTGGAGTCATCCGCAAAACCGAAACAGGAAGAAGCTGCCGAAAAACCGC
AGCAGGCAGAAACTGCCAAAACCGCACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGT
ACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAA
GCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATA
CGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGT
TCGGACGGCAAAAAACACGAAACGGCACAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGG
TAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTA
TCGATTCGACCATCACCGAAATTATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGG
GATGCCGAACGCGATTTGAACAAATTGCGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(268-339)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

87.324

100

0.909


Multiple sequence alignment