Detailed information NTG0189947

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6L21_RS09345
• Genome accession: NZ_CP016644
• Coordinates: 1790373..1791233 (+)
• Length: 286 a.a.
• NCBI ID: WP_002241067.1
• Uniprot ID: A1KVV2
• Organism: Neisseria meningitidis strain M07162
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785373..1796233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6L21_RS09325 (A6L21_09325)	dapD	1785883..1786704 (-)	822	WP_002220281.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
A6L21_RS09330 (A6L21_09330)	-	1786714..1786944 (-)	231	WP_025462060.1	hypothetical protein	-
A6L21_RS09335 (A6L21_09335)	pgi	1786914..1788557 (-)	1644	WP_002247959.1	glucose-6-phosphate isomerase	-
A6L21_RS09340 (A6L21_09340)	pilG	1789067..1790299 (+)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
A6L21_RS09345 (A6L21_09345)	pilD	1790373..1791233 (+)	861	WP_002241067.1	prepilin peptidase	Machinery gene
A6L21_RS09350 (A6L21_09350)	coaE	1791235..1791867 (+)	633	WP_002216402.1	dephospho-CoA kinase	-
A6L21_RS09355 (A6L21_09355)	-	1791860..1792069 (+)	210	WP_002216401.1	DNA gyrase inhibitor YacG	-
A6L21_RS09360 (A6L21_09360)	pilF	1792154..1793830 (-)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A6L21_RS09370 (A6L21_09370)	-	1794322..1794768 (-)	447	WP_002220271.1	DUF441 domain-containing protein	-
A6L21_RS09375 (A6L21_09375)	ispB	1794773..1795747 (-)	975	WP_002247958.1	octaprenyl diphosphate synthase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31331.48 Da
• Isoelectric Point: 9.1920

>NTDB_id=189947 A6L21_RS09345 WP_002241067.1 1790373..1791233(+) (pilD) [Neisseria meningitidis strain M07162]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKKHLNLPLTEKESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=189947 A6L21_RS09345 WP_002241067.1 1790373..1791233(+) (pilD) [Neisseria meningitidis strain M07162]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAAAACATTTAAACCTGCCGCTGA
CCGAAAAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTATTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACACTGCCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

3D structure

• AlphaFold DB: A1KVV2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434
pilD	Vibrio campbellii strain DS40M4	44.565	96.503	0.43