Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IEC33019_RS24220 Genome accession   NZ_CP016634
Coordinates   5184249..5184794 (-) Length   181 a.a.
NCBI ID   WP_070093906.1    Uniprot ID   A0A1B2FDH2
Organism   Pseudomonas putida strain IEC33019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5179249..5189794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC33019_RS24210 (IEC33019_4716) - 5181741..5182511 (-) 771 WP_070093908.1 SDR family NAD(P)-dependent oxidoreductase -
  IEC33019_RS24215 (IEC33019_4717) - 5182784..5184166 (+) 1383 WP_070093907.1 PLP-dependent aminotransferase family protein -
  IEC33019_RS24220 (IEC33019_4718) ssb 5184249..5184794 (-) 546 WP_070093906.1 single-stranded DNA-binding protein Machinery gene
  IEC33019_RS24225 (IEC33019_4719) - 5184804..5186198 (-) 1395 WP_070093905.1 MFS transporter -
  IEC33019_RS24230 (IEC33019_4720) uvrA 5186328..5189162 (+) 2835 WP_070093904.1 excinuclease ABC subunit UvrA -
  IEC33019_RS24235 (IEC33019_4721) bfr 5189235..5189699 (-) 465 WP_012316512.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20176.33 Da        Isoelectric Point: 5.9312

>NTDB_id=189881 IEC33019_RS24220 WP_070093906.1 5184249..5184794(-) (ssb) [Pseudomonas putida strain IEC33019]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVAMFGKLAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYNQSGGQQQYNQAPRQQAPRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=189881 IEC33019_RS24220 WP_070093906.1 5184249..5184794(-) (ssb) [Pseudomonas putida strain IEC33019]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAACAGTCCGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGTGTTGCCATGTTCGGCAAGCTCGCCGAGATCGCGGGCGAATACCTGCGCAAAGGTTCCCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAAAACCAGCAACAGGGTGGCGATCCGTACAACCAAGGTGGTGGCAACTACAACC
AAAGTGGCGGCCAGCAGCAGTACAACCAGGCGCCACGCCAGCAGGCTCCGCGTCCACAGCAGGCGCCACAGCGCCCTGCA
CCGCAGCAGCCAGCTCCGCAACCGGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2FDH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Neisseria meningitidis MC58

51.63

100

0.525
  ssb Glaesserella parasuis strain SC1401

49.474

100

0.519
  ssb Neisseria gonorrhoeae MS11

51.099

100

0.514

Multiple sequence alignment