Detailed information NTG0189864

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IEC33019_RS02955
• Genome accession: NZ_CP016634
• Coordinates: 544693..546912 (+)
• Length: 739 a.a.
• NCBI ID: WP_070092597.1
• Uniprot ID: A0A1B2F1L9
• Organism: Pseudomonas putida strain IEC33019
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 539693..551912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IEC33019_RS02935 (IEC33019_0511)	-	541551..542174 (+)	624	WP_070092600.1	glutathione S-transferase	-
IEC33019_RS02940 (IEC33019_0512)	-	542316..543248 (+)	933	WP_070092599.1	ABC transporter ATP-binding protein	-
IEC33019_RS02945 (IEC33019_0513)	-	543245..544024 (+)	780	WP_070092598.1	ABC transporter permease	-
IEC33019_RS02950	-	543908..544549 (-)	642	WP_139139875.1	DUF2062 domain-containing protein	-
IEC33019_RS02955 (IEC33019_0515)	comA	544693..546912 (+)	2220	WP_070092597.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IEC33019_RS02960 (IEC33019_0516)	exbB	547023..547658 (+)	636	WP_070092596.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
IEC33019_RS02965 (IEC33019_0517)	-	547655..548089 (+)	435	WP_070092595.1	biopolymer transporter ExbD	-
IEC33019_RS02970 (IEC33019_0518)	lpxK	548089..549099 (+)	1011	WP_070092594.1	tetraacyldisaccharide 4'-kinase	-
IEC33019_RS02975 (IEC33019_0519)	-	549142..549327 (+)	186	WP_003247142.1	Trm112 family protein	-
IEC33019_RS02980 (IEC33019_0520)	kdsB	549324..550088 (+)	765	WP_070092593.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
IEC33019_RS02985 (IEC33019_0521)	-	550088..550552 (+)	465	WP_070092592.1	low molecular weight protein-tyrosine-phosphatase	-
IEC33019_RS02990 (IEC33019_0522)	murB	550549..551565 (+)	1017	WP_070092591.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79568.77 Da
• Isoelectric Point: 10.9715

>NTDB_id=189864 IEC33019_RS02955 WP_070092597.1 544693..546912(+) (comA) [Pseudomonas putida strain IEC33019]
MRTGMFALALGLLGLRFLPALPSVGALLTMLVLGMFCLFGRARPVGCFLLGLSWACWSAQQALDDRLEAALDGRTLWLEG
RVVGLPVQRGRSVGFELEEAVSRRAVLPQRLQLNWFEGQQPRPGEHWRLAVTLKRPHGLLNPHAPDREALLLARRIGAVG
TVKAGQLLEPATSNWRGALRQRLLAVDAQGREAALAALVLGDGSGLARADWQALQATGTVHLMVISGQHIGLVAGLVYGL
VAWLARLGLWPLRLPWLPWACALSLVSALGYGGLAGFGVPVQRACLMLAMVLLWRLRFRQLGALMPLLAALCGVLLIEPL
ASLLPGFWLSFAAVAVLVFCFAGRLGGWRPWQAWSRAQWGVAVGLLPALLALGLPISLTAPVANLLAVPWVSFAVLPLAL
LGSALLPLGQPGELLLWLAGGLLEVLFQQLALLAQWRPAWEPQALTPLAGLLVGLGALLLLLPRGVPLRGLGGVMLMALW
APREPVPQGQVDVLQLDVGQGLAVLLRTRTHSLLYDAGPAKGEVDLGERVVLPTLRKLGVKQLDLMLISHGHADHAGGAG
AIGRGLPLGRVLAGEPGQLPQALQAQPCVSGERWQWDGVDFMLWQWAQGPAGNERSCVLLVQAHGERLLLAGDMEAGAER
AWLAASDAPRIDWLQAPHHGSRSSSTEPFIRAMAPRGVLISRGRYNGFGHPHPQVVARYRRYGVSVHDTALEGALRLRLG
SHGEVEGVRAQRRFWRLVQ

Nucleotide

• Length: 2220 bp

>NTDB_id=189864 IEC33019_RS02955 WP_070092597.1 544693..546912(+) (comA) [Pseudomonas putida strain IEC33019]
ATGCGCACAGGGATGTTCGCGCTCGCGCTCGGGCTGTTGGGCCTGCGTTTTCTACCTGCTTTGCCATCGGTCGGCGCGCT
GCTGACGATGCTGGTGCTTGGTATGTTCTGCCTCTTTGGCAGGGCCAGGCCTGTTGGCTGCTTTCTACTCGGATTGAGCT
GGGCCTGTTGGTCGGCGCAGCAAGCGCTGGATGACCGTCTGGAGGCTGCGCTGGATGGGCGTACGCTGTGGCTGGAGGGC
CGCGTGGTGGGCTTGCCGGTGCAGCGGGGTCGGTCTGTCGGCTTCGAACTCGAAGAGGCTGTTTCACGCCGTGCTGTCCT
GCCGCAGCGGCTCCAGTTGAATTGGTTCGAAGGACAACAACCGAGGCCCGGCGAACATTGGCGCCTGGCTGTCACGCTCA
AGCGTCCTCATGGGCTTCTCAACCCTCATGCTCCCGATCGGGAAGCGCTTTTGCTGGCGCGTCGGATCGGTGCGGTCGGC
ACGGTCAAGGCCGGTCAGTTGCTAGAGCCTGCCACGAGTAACTGGCGCGGCGCTCTACGCCAGCGCCTGCTGGCTGTCGA
TGCGCAGGGGCGTGAAGCCGCCCTGGCGGCATTGGTGCTGGGGGATGGCTCAGGGCTTGCACGCGCTGACTGGCAGGCGT
TGCAGGCCACCGGCACGGTGCACCTGATGGTGATCTCCGGCCAGCACATTGGGTTGGTGGCTGGGCTGGTCTATGGCTTG
GTGGCGTGGCTGGCGCGCCTGGGCCTGTGGCCCTTGCGACTGCCGTGGTTGCCCTGGGCATGCGCGCTGAGCTTGGTCTC
GGCGCTGGGTTATGGCGGGCTCGCCGGGTTCGGTGTTCCTGTGCAGCGCGCCTGCCTGATGTTGGCGATGGTTTTGCTCT
GGCGTCTGCGCTTTCGCCAGCTTGGGGCGCTCATGCCGTTGTTGGCGGCCCTGTGTGGCGTACTGCTGATCGAGCCGTTG
GCGAGCCTGCTGCCGGGGTTCTGGCTGTCATTCGCCGCCGTGGCGGTGCTGGTTTTCTGCTTTGCCGGGCGCCTCGGCGG
CTGGCGGCCTTGGCAGGCCTGGAGCCGGGCGCAATGGGGGGTTGCAGTGGGGCTGTTGCCGGCGTTGCTGGCGCTGGGCT
TGCCGATCAGTCTGACGGCGCCGGTGGCCAACCTGCTGGCGGTGCCCTGGGTCAGTTTTGCCGTGTTGCCGCTGGCGCTG
CTGGGCAGTGCGTTGCTGCCATTGGGTCAGCCCGGGGAGCTGTTGCTGTGGTTGGCAGGTGGATTGTTGGAGGTGTTGTT
TCAGCAATTGGCGCTGTTGGCACAGTGGCGTCCGGCATGGGAGCCCCAGGCATTGACGCCGTTGGCAGGGTTGCTGGTTG
GCCTGGGGGCGCTGTTGCTGTTGCTGCCCCGGGGCGTGCCGCTGCGCGGCCTGGGGGGCGTGATGCTGATGGCGTTGTGG
GCGCCTCGGGAGCCGGTGCCGCAGGGGCAGGTCGATGTCCTGCAACTGGATGTGGGGCAGGGCCTGGCGGTGCTGTTGCG
AACCCGCACGCATAGCCTGCTGTACGATGCCGGCCCCGCCAAGGGTGAGGTGGACCTGGGCGAACGTGTGGTGTTGCCGA
CTTTGCGCAAGCTGGGCGTCAAGCAGCTGGACCTGATGCTGATCAGCCATGGTCACGCCGATCATGCCGGTGGCGCCGGG
GCCATTGGTCGTGGTCTGCCGCTGGGCAGGGTGCTTGCGGGTGAGCCTGGGCAGTTGCCGCAGGCATTGCAGGCGCAACC
TTGCGTCAGCGGTGAACGCTGGCAGTGGGACGGGGTGGACTTCATGCTCTGGCAGTGGGCCCAGGGGCCGGCCGGCAACG
AGCGGTCCTGTGTGCTGCTGGTACAGGCCCACGGCGAGCGGCTGTTGCTGGCTGGGGACATGGAGGCCGGCGCCGAGCGG
GCCTGGCTGGCCGCGAGCGACGCGCCGCGCATCGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCATCCACAGA
GCCGTTCATCCGCGCCATGGCGCCCCGTGGGGTGTTGATTTCGCGTGGGCGCTACAACGGCTTCGGCCATCCGCATCCCC
AGGTAGTGGCGCGTTACCGACGGTACGGAGTGAGCGTTCATGACACGGCGCTGGAGGGAGCGCTGCGCTTGCGCCTGGGC
AGCCATGGCGAGGTCGAGGGGGTCCGGGCGCAGCGGCGATTCTGGCGGCTGGTGCAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-677)

• Domain of unknown function (DUF4131) (DUF4131) (23-166)

3D structure

• AlphaFold DB: A0A1B2F1L9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.471	97.158	0.578
comA	Ralstonia pseudosolanacearum GMI1000	35.006	100	0.368