Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IEC33019_RS02960 Genome accession   NZ_CP016634
Coordinates   547023..547658 (+) Length   211 a.a.
NCBI ID   WP_070092596.1    Uniprot ID   -
Organism   Pseudomonas putida strain IEC33019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542023..552658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC33019_RS02940 (IEC33019_0512) - 542316..543248 (+) 933 WP_070092599.1 ABC transporter ATP-binding protein -
  IEC33019_RS02945 (IEC33019_0513) - 543245..544024 (+) 780 WP_070092598.1 ABC transporter permease -
  IEC33019_RS02950 - 543908..544549 (-) 642 WP_139139875.1 DUF2062 domain-containing protein -
  IEC33019_RS02955 (IEC33019_0515) comA 544693..546912 (+) 2220 WP_070092597.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IEC33019_RS02960 (IEC33019_0516) exbB 547023..547658 (+) 636 WP_070092596.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IEC33019_RS02965 (IEC33019_0517) - 547655..548089 (+) 435 WP_070092595.1 biopolymer transporter ExbD -
  IEC33019_RS02970 (IEC33019_0518) lpxK 548089..549099 (+) 1011 WP_070092594.1 tetraacyldisaccharide 4'-kinase -
  IEC33019_RS02975 (IEC33019_0519) - 549142..549327 (+) 186 WP_003247142.1 Trm112 family protein -
  IEC33019_RS02980 (IEC33019_0520) kdsB 549324..550088 (+) 765 WP_070092593.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IEC33019_RS02985 (IEC33019_0521) - 550088..550552 (+) 465 WP_070092592.1 low molecular weight protein-tyrosine-phosphatase -
  IEC33019_RS02990 (IEC33019_0522) murB 550549..551565 (+) 1017 WP_070092591.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22814.05 Da        Isoelectric Point: 7.3616

>NTDB_id=189865 IEC33019_RS02960 WP_070092596.1 547023..547658(+) (exbB) [Pseudomonas putida strain IEC33019]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYVGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=189865 IEC33019_RS02960 WP_070092596.1 547023..547658(+) (exbB) [Pseudomonas putida strain IEC33019]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACGCTGCGCGCCAGTCGCGTGACCCCGCCACACCTGCTTGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAAGCCCTGCGCGCCGATTCACCGTTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCATCCCGGGTCATCCACGAGCTGGAGCGTTATGT
CGGTACCTTGGGCACCATCGCTGCGATGGCCCCCTTGCTGGGCCTTCTGGGCACGGTGTTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACCCGGCCGTGCTCGCAGGCGGTATTTCCAAGGCTCTGGTCACCACCGCC
GCCGGTCTGATGGTGGGGATCCCGGCGGTCTTCTTCCATCGCTTCCTGCAGCGACGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815

Multiple sequence alignment