Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   B9L64_RS06265 Genome accession   NZ_CP020915
Coordinates   1224640..1225335 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1219640..1230335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS06240 minD 1220576..1221382 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  B9L64_RS06245 minC 1221384..1222064 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  B9L64_RS06250 mreD 1222117..1222635 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  B9L64_RS06255 mreC 1222632..1223504 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  B9L64_RS06260 mreB 1223535..1224548 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  B9L64_RS06265 ysxA/radC 1224640..1225335 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  B9L64_RS06270 maf 1225372..1225941 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  B9L64_RS06275 spoIIB 1226094..1227092 (-) 999 WP_110109450.1 stage II sporulation protein SpoIIB -
  B9L64_RS06280 comC 1227226..1227972 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  B9L64_RS06285 folC 1228112..1229404 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=189783 B9L64_RS06265 WP_003246034.1 1224640..1225335(-) (ysxA/radC) [Bacillus subtilis strain 50-1]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=189783 B9L64_RS06265 WP_003246034.1 1224640..1225335(-) (ysxA/radC) [Bacillus subtilis strain 50-1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment