Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   B9J09_RS05170 Genome accession   NZ_CP020870
Coordinates   1111069..1112100 (+) Length   343 a.a.
NCBI ID   WP_010894368.1    Uniprot ID   Q9PC79
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106069..1117100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS05145 (B9J09_05145) - 1106297..1106872 (+) 576 WP_232755963.1 DUF2726 domain-containing protein -
  B9J09_RS05150 (B9J09_05150) - 1107003..1107737 (+) 735 WP_046420121.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B9J09_RS05155 (B9J09_05155) ruvC 1107857..1108378 (+) 522 WP_010894371.1 crossover junction endodeoxyribonuclease RuvC -
  B9J09_RS05160 (B9J09_05160) ruvA 1108464..1109048 (+) 585 WP_046420118.1 Holliday junction branch migration protein RuvA -
  B9J09_RS05165 (B9J09_05165) - 1109103..1111007 (+) 1905 WP_010894369.1 potassium transporter Kup -
  B9J09_RS05170 (B9J09_05170) ruvB 1111069..1112100 (+) 1032 WP_010894368.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B9J09_RS05175 (B9J09_05175) ybgC 1112118..1112543 (+) 426 WP_031336563.1 tol-pal system-associated acyl-CoA thioesterase -
  B9J09_RS05180 (B9J09_05180) tolQ 1112567..1113340 (+) 774 WP_010894366.1 protein TolQ -
  B9J09_RS05185 (B9J09_05185) tolR 1113383..1113808 (+) 426 WP_031336566.1 protein TolR -
  B9J09_RS05190 (B9J09_05190) tolA 1113798..1114838 (+) 1041 WP_010894364.1 cell envelope integrity protein TolA -
  B9J09_RS05195 (B9J09_05195) tolB 1115100..1116419 (+) 1320 WP_046420115.1 Tol-Pal system beta propeller repeat protein TolB -
  B9J09_RS05200 (B9J09_05200) pal 1116485..1117021 (+) 537 WP_031336568.1 peptidoglycan-associated lipoprotein Pal -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37992.54 Da        Isoelectric Point: 4.8093

>NTDB_id=189694 B9J09_RS05170 WP_010894368.1 1111069..1112100(+) (ruvB) [Xylella fastidiosa subsp. pauca strain De Donno]
MDRIIDTAATSEDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYELGVKL
RVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPVVEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTR
TGLLTAPLRDRFGIVQRLEFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQIT
IEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVVEPYLIQQGFLVRTARGRMATDK
AYQHLALQPRERVSAFTDPEDLF

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=189694 B9J09_RS05170 WP_010894368.1 1111069..1112100(+) (ruvB) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGGATCGCATCATCGACACCGCAGCCACCAGTGAGGATGAAGCGATTGAGGTCAGTATTCGTCCCAAGCGTTTGGCTGA
TTATCTCGGTCAACAACCTGTACGTGAGCAGATGGATATCTACATCCAAGCCACTAAGGCGCGTGCTGAGGCACTGGATC
ACGTACTCATTTTTGGTCCACCTGGATTGGGCAAGACCACCTTGAGCCATGTCATTGCTTACGAACTCGGGGTCAAGCTA
CGTGTGACTTCTGGTCCAGTGATCGAGAAAGCAGGAGATCTAGCCGCACTGCTTACCAATCTACAGCCTTACGATGTGCT
GTTTATTGATGAGATTCATCGGCTATCACCAGTGGTTGAGGAGGTGTTATATCCAGCAATGGAGGACTTCCAGATCGATA
TTATGATTGGCGAGGGGCCGGCTGCGCGGTCGATAAAGATCGACTTGCCACCTTTCACTCTCATAGGTGCTACTACTCGT
ACAGGTTTGCTGACTGCGCCGCTGCGCGACCGTTTTGGTATCGTCCAGCGTTTGGAGTTCTATAGTCCTGAGGATCTTGC
TAGGATCGTAAGACGCTCGGCAGGCATTCTCAATATCGACTGTACTACGGAGGGTGCAGCTGAGATTGCGCAACGTGCAC
GCGGTACGCCTCGCATTGCTAATCGTTTGTTGCGGCGGGTACGCGATTATGCCGAGGTTAAGGCGGGTGGGCAGATTACA
ATTGAGGTGGCGCAAGCAGCGATGCAGATGCTCAAGGTTGATCAAGGAGGCTTTGATGAACTAGACCGACGCTTGCTTCA
CACCATCGTTGAGTATTTCGACGGCGGTCCTGTCGGGATCGAGTCACTCGCAGCCTCGTTGTCGGAGGAGCGTGGTACCC
TTGAAGATGTCGTTGAGCCTTACCTAATTCAACAAGGTTTCTTGGTACGTACTGCGCGTGGACGTATGGCCACAGATAAG
GCCTACCAGCATCTCGCTCTGCAGCCTCGTGAGCGAGTGTCGGCTTTTACTGATCCAGAAGACTTGTTTTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PC79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

56.627

96.793

0.548
  ruvB Streptococcus pneumoniae R6

56.627

96.793

0.548
  ruvB Streptococcus pneumoniae D39

56.627

96.793

0.548
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.364

96.21

0.542
  ruvB Helicobacter pylori 26695

53.681

95.044

0.51
  ruvB Synechocystis sp. PCC 6803

52.795

93.878

0.496