Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B9J09_RS01960 Genome accession   NZ_CP020870
Coordinates   453407..453793 (-) Length   128 a.a.
NCBI ID   WP_031336286.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448407..458793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS01935 (B9J09_01935) - 448685..449062 (+) 378 WP_046418016.1 DUF4124 domain-containing protein -
  B9J09_RS01940 (B9J09_01940) - 449147..450841 (+) 1695 WP_046418017.1 proline--tRNA ligase -
  B9J09_RS01945 (B9J09_01945) - 450991..451353 (+) 363 Protein_352 H-NS family nucleoid-associated regulatory protein -
  B9J09_RS12310 - 451704..451904 (-) 201 WP_010892976.1 hypothetical protein -
  B9J09_RS01955 (B9J09_01955) - 452473..452823 (+) 351 WP_004083585.1 DMT family protein -
  B9J09_RS01960 (B9J09_01960) pilH 453407..453793 (-) 387 WP_031336286.1 twitching motility response regulator PilH Machinery gene
  B9J09_RS01965 (B9J09_01965) - 453886..454890 (-) 1005 WP_046418019.1 oxidoreductase -
  B9J09_RS01970 (B9J09_01970) hflK 455033..456172 (+) 1140 WP_046418021.1 FtsH protease activity modulator HflK -
  B9J09_RS01975 (B9J09_01975) - 456169..457032 (+) 864 WP_010892981.1 protease modulator HflC -
  B9J09_RS01980 (B9J09_01980) - 457192..457377 (+) 186 WP_031336290.1 DUF2065 family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=189685 B9J09_RS01960 WP_031336286.1 453407..453793(-) (pilH) [Xylella fastidiosa subsp. pauca strain De Donno]
MARVLIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVIL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=189685 B9J09_RS01960 WP_031336286.1 453407..453793(-) (pilH) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGGCACGCGTTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGTATCCAGAGAATAGTCGAAAAACTAGGGCACGA
AACCATTACCGCAACCGATGGCAACACCGGGGTGGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAGCCAGCAACGCAACATGTACCAGTCATCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

42.857

92.969

0.398

Multiple sequence alignment