Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BB934_RS23860 Genome accession   NZ_CP016616
Coordinates   4980893..4981432 (+) Length   179 a.a.
NCBI ID   WP_099511917.1    Uniprot ID   A0A1B2ELJ3
Organism   Microvirga ossetica strain V5/3m     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4975893..4986432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB934_RS23845 (BB934_23575) - 4975928..4976737 (-) 810 WP_099511914.1 class I SAM-dependent methyltransferase -
  BB934_RS23850 (BB934_23580) uvrA 4976882..4979878 (-) 2997 WP_099511915.1 excinuclease ABC subunit UvrA -
  BB934_RS23855 (BB934_23585) - 4980084..4980758 (+) 675 WP_099511916.1 hypothetical protein -
  BB934_RS23860 (BB934_23590) ssb 4980893..4981432 (+) 540 WP_099511917.1 single-stranded DNA-binding protein Machinery gene
  BB934_RS23865 (BB934_23595) - 4981766..4981993 (+) 228 WP_099511918.1 DUF6894 family protein -
  BB934_RS23870 (BB934_23600) - 4982047..4983477 (-) 1431 WP_099511919.1 calcium-binding protein -
  BB934_RS23875 (BB934_23605) - 4983675..4984790 (+) 1116 WP_099511920.1 M20 family metallopeptidase -
  BB934_RS23880 (BB934_23610) - 4984787..4985299 (+) 513 WP_099511921.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19391.26 Da        Isoelectric Point: 6.0050

>NTDB_id=189685 BB934_RS23860 WP_099511917.1 4980893..4981432(+) (ssb) [Microvirga ossetica strain V5/3m]
MAGSVNKVILVGNLGRDPEVRRLSNGEPVVNLRIATSETWKDKGTGERKEKTEWHSVVIFNENLGRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGVEKYSTEVVLQRFRGELTILDSRGGGGGASEYGDEEQGQIARGGDFGRSPSQDRRPAPSSGGGNSA
GGNSGGGSRYSDIDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=189685 BB934_RS23860 WP_099511917.1 4980893..4981432(+) (ssb) [Microvirga ossetica strain V5/3m]
ATGGCTGGCAGCGTGAACAAGGTGATATTGGTCGGCAATCTGGGGCGGGACCCTGAGGTGCGCCGGCTGTCGAACGGGGA
GCCGGTGGTGAACCTGCGCATTGCCACGTCCGAGACCTGGAAGGACAAGGGCACGGGCGAGCGCAAGGAGAAGACTGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTCGGGCGTGTGGCGGAGCAGTATCTGAAGAAGGGCTCGAAGGTGTACATC
GAGGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAGCGGGGTCGAGAAGTATTCGACCGAGGTGGTGCTGCAGCGTTT
CCGCGGCGAGCTGACGATCCTGGACAGCCGCGGCGGCGGTGGCGGCGCGTCGGAGTACGGCGACGAGGAGCAAGGCCAGA
TCGCCCGCGGCGGCGATTTCGGACGCTCCCCCTCCCAGGACCGCCGTCCGGCGCCGTCCTCCGGTGGCGGCAATAGCGCG
GGTGGAAATAGCGGAGGAGGCTCCCGCTACAGCGATATCGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2ELJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.279

100

0.503
  ssb Neisseria gonorrhoeae MS11

41.758

100

0.425
  ssb Neisseria meningitidis MC58

40.223

100

0.402
  ssb Glaesserella parasuis strain SC1401

58.197

68.156

0.397

Multiple sequence alignment