Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BB934_RS07920 Genome accession   NZ_CP016616
Coordinates   1671386..1671889 (+) Length   167 a.a.
NCBI ID   WP_099509144.1    Uniprot ID   A0A1B2EDT8
Organism   Microvirga ossetica strain V5/3m     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666386..1676889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB934_RS07890 (BB934_07790) - 1666421..1668256 (-) 1836 WP_099509138.1 AAA family ATPase -
  BB934_RS07895 (BB934_07795) - 1668253..1668549 (-) 297 WP_099509139.1 hypothetical protein -
  BB934_RS07900 (BB934_07800) - 1668836..1669441 (+) 606 WP_099509140.1 hypothetical protein -
  BB934_RS07905 (BB934_07805) - 1669447..1669860 (+) 414 WP_099509141.1 hypothetical protein -
  BB934_RS07910 (BB934_07810) - 1669889..1670164 (+) 276 WP_099509142.1 hypothetical protein -
  BB934_RS07915 (BB934_07815) - 1670233..1671042 (-) 810 WP_099509143.1 class I SAM-dependent methyltransferase -
  BB934_RS07920 (BB934_07820) ssb 1671386..1671889 (+) 504 WP_099509144.1 single-stranded DNA-binding protein Machinery gene
  BB934_RS07925 (BB934_07825) - 1671954..1672868 (-) 915 WP_175608880.1 hypothetical protein -
  BB934_RS07930 (BB934_07830) - 1673032..1673307 (-) 276 WP_099509145.1 glycine zipper domain-containing protein -
  BB934_RS07935 (BB934_07835) - 1673689..1674261 (+) 573 WP_099509146.1 HdeD family acid-resistance protein -
  BB934_RS07940 (BB934_07840) - 1674284..1676116 (-) 1833 WP_099509147.1 SLC13 family permease -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18555.53 Da        Isoelectric Point: 5.8652

>NTDB_id=189681 BB934_RS07920 WP_099509144.1 1671386..1671889(+) (ssb) [Microvirga ossetica strain V5/3m]
MAGSVNKVILVGNLGRDPEVRRLSNGEPVVNLRIATSETWKDKGTGERKEKTEWHSVVIFNENLGRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGVEKYSTEVVLQRFRGELTILDSRGGGGGASEYGDEEQGQIARGGDFGRSSPMERRPEPAGSSRHGD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=189681 BB934_RS07920 WP_099509144.1 1671386..1671889(+) (ssb) [Microvirga ossetica strain V5/3m]
ATGGCTGGCAGTGTGAACAAGGTGATATTGGTCGGCAATCTGGGGCGGGACCCTGAGGTGCGCCGGCTGTCGAACGGGGA
GCCGGTGGTGAACCTGCGCATTGCCACGTCCGAGACCTGGAAGGACAAGGGCACGGGCGAGCGCAAGGAGAAGACTGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTCGGGCGTGTGGCGGAGCAGTATCTGAAGAAGGGCTCGAAGGTGTACATC
GAGGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAGCGGGGTCGAGAAGTATTCGACCGAGGTGGTGCTGCAGCGTTT
CCGCGGCGAGCTGACGATCCTGGACAGCCGCGGCGGCGGTGGCGGCGCGTCGGAGTACGGCGACGAGGAGCAAGGCCAGA
TCGCACGCGGCGGCGATTTCGGACGCTCCTCCCCGATGGAGCGCCGGCCCGAGCCGGCAGGATCCTCCCGCCACGGCGAT
TTCGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2EDT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.539
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.521
  ssb Neisseria gonorrhoeae MS11

43.094

100

0.467
  ssb Neisseria meningitidis MC58

41.667

100

0.449

Multiple sequence alignment