Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BC375_RS07855 Genome accession   NZ_CP016610
Coordinates   1582281..1582775 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa strain Salento-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1577281..1587775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS07840 (BC375_07340) gloA 1577541..1578068 (+) 528 WP_010893902.1 lactoylglutathione lyase -
  BC375_RS07845 (BC375_07345) - 1578291..1579445 (-) 1155 WP_234048990.1 cation:proton antiporter -
  BC375_RS07850 (BC375_07350) - 1579756..1580667 (-) 912 WP_010893900.1 class I SAM-dependent methyltransferase -
  BC375_RS07855 (BC375_07355) ssb 1582281..1582775 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  BC375_RS07860 (BC375_07360) - 1583024..1584022 (+) 999 WP_023907801.1 polyprenyl synthetase family protein -
  BC375_RS07865 (BC375_07365) cyoA 1584486..1585445 (+) 960 WP_046419442.1 ubiquinol oxidase subunit II -
  BC375_RS07870 (BC375_07370) cyoB 1585439..1587436 (+) 1998 WP_046419440.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=189669 BC375_RS07855 WP_004083791.1 1582281..1582775(-) (ssb) [Xylella fastidiosa strain Salento-2]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=189669 BC375_RS07855 WP_004083791.1 1582281..1582775(-) (ssb) [Xylella fastidiosa strain Salento-2]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment