Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   A6B42_RS00450 Genome accession   NZ_CP016607
Coordinates   87858..88187 (-) Length   109 a.a.
NCBI ID   WP_178216616.1    Uniprot ID   -
Organism   Mannheimia varigena strain F222     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 82858..93187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B42_RS00435 (A6B42_00435) manX 83068..84045 (-) 978 WP_178216612.1 PTS mannose transporter subunit IIAB -
  A6B42_RS00440 (A6B42_00440) gshAB 84367..86643 (-) 2277 WP_178216614.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  A6B42_RS00445 (A6B42_00445) asd 86806..87696 (-) 891 WP_025342174.1 archaetidylserine decarboxylase -
  A6B42_RS00450 (A6B42_00450) comEA/comE1 87858..88187 (-) 330 WP_178216616.1 ComEA family DNA-binding protein Machinery gene
  A6B42_RS00455 (A6B42_00455) - 88477..89838 (+) 1362 WP_178216618.1 LysM-like peptidoglycan-binding domain-containing protein -
  A6B42_RS00460 (A6B42_00460) - 89897..90316 (+) 420 WP_178216620.1 MliC family protein -
  A6B42_RS00465 (A6B42_00465) waaF 90351..91388 (+) 1038 WP_178216621.1 lipopolysaccharide heptosyltransferase II -
  A6B42_RS00470 (A6B42_00470) rfaC 91458..92417 (+) 960 WP_178216623.1 lipopolysaccharide heptosyltransferase RfaC -
  A6B42_RS00475 (A6B42_00475) rpsL 92537..92911 (+) 375 WP_005708967.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11903.66 Da        Isoelectric Point: 9.7287

>NTDB_id=189640 A6B42_RS00450 WP_178216616.1 87858..88187(-) (comEA/comE1) [Mannheimia varigena strain F222]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNVVNINTASAAKLQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=189640 A6B42_RS00450 WP_178216616.1 87858..88187(-) (comEA/comE1) [Mannheimia varigena strain F222]
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAATGTCGTAAACATCAACACCGCAAGTG
CTGCTAAGTTACAAGATAAACTAGTAGGTATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGGCAAGCAACAGTAGAAAAAAATCGAGCAAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.55
  comE1/comEA Haemophilus influenzae Rd KW20

46.429

100

0.477
  comEA Vibrio campbellii strain DS40M4

38.889

99.083

0.385

Multiple sequence alignment