Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A6A10_RS03590 | Genome accession | NZ_CP016604 |
| Coordinates | 776580..777023 (-) | Length | 147 a.a. |
| NCBI ID | WP_121121906.1 | Uniprot ID | A0A420XIW9 |
| Organism | Otariodibacter oris strain Baika1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 771580..782023
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6A10_RS03570 (A6A10_03550) | purF | 771755..773272 (+) | 1518 | WP_121121912.1 | amidophosphoribosyltransferase | - |
| A6A10_RS03575 (A6A10_03555) | - | 773323..773724 (-) | 402 | WP_121121910.1 | prepilin peptidase | - |
| A6A10_RS03580 (A6A10_03560) | - | 773981..775168 (-) | 1188 | WP_121121908.1 | type II secretion system F family protein | - |
| A6A10_RS03585 (A6A10_03565) | pilB | 775161..776552 (-) | 1392 | WP_229583618.1 | GspE/PulE family protein | Machinery gene |
| A6A10_RS03590 (A6A10_03570) | pilA | 776580..777023 (-) | 444 | WP_121121906.1 | pilin | Machinery gene |
| A6A10_RS03595 (A6A10_03575) | radA | 777236..778615 (+) | 1380 | WP_121121904.1 | DNA repair protein RadA | - |
| A6A10_RS03600 (A6A10_03580) | - | 778688..779014 (-) | 327 | WP_121121902.1 | DUF496 family protein | - |
| A6A10_RS03605 (A6A10_03585) | mepA | 779205..780032 (+) | 828 | WP_121121900.1 | penicillin-insensitive murein endopeptidase | - |
| A6A10_RS03610 (A6A10_03590) | - | 780059..781978 (+) | 1920 | WP_121121898.1 | DNA topoisomerase III | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15676.89 Da Isoelectric Point: 5.8249
>NTDB_id=189583 A6A10_RS03590 WP_121121906.1 776580..777023(-) (pilA) [Otariodibacter oris strain Baika1]
MKNFHINKTLKAFTLIELMIVIAIIAILATIAIPSYNGYTKKAALSELLRASSTYKADVEICIYNTGALSSCSAGKNGIQ
AALSDSDDNKYLKSVSVSDGVIAVEGKASLADYGYTLTPKISDNNISWSTTCKGEDTSLFPANFCDS
MKNFHINKTLKAFTLIELMIVIAIIAILATIAIPSYNGYTKKAALSELLRASSTYKADVEICIYNTGALSSCSAGKNGIQ
AALSDSDDNKYLKSVSVSDGVIAVEGKASLADYGYTLTPKISDNNISWSTTCKGEDTSLFPANFCDS
Nucleotide
Download Length: 444 bp
>NTDB_id=189583 A6A10_RS03590 WP_121121906.1 776580..777023(-) (pilA) [Otariodibacter oris strain Baika1]
ATGAAAAATTTCCATATTAATAAGACACTTAAGGCTTTTACTCTCATTGAACTCATGATTGTTATTGCTATCATTGCAAT
TCTTGCAACCATTGCGATTCCATCCTATAACGGCTATACAAAAAAAGCAGCGCTATCAGAATTATTACGAGCCTCTTCAA
CCTATAAAGCCGATGTTGAAATATGCATTTATAACACTGGGGCATTATCAAGCTGTTCAGCTGGAAAAAATGGTATTCAA
GCTGCACTATCAGACAGTGATGACAATAAATACCTCAAATCTGTTTCTGTATCTGACGGAGTTATCGCCGTTGAAGGAAA
AGCTAGCTTAGCAGATTATGGCTATACCCTAACACCTAAGATAAGTGATAACAATATTAGCTGGTCAACAACCTGTAAAG
GCGAAGATACCAGCCTATTTCCAGCTAACTTCTGTGACTCATAA
ATGAAAAATTTCCATATTAATAAGACACTTAAGGCTTTTACTCTCATTGAACTCATGATTGTTATTGCTATCATTGCAAT
TCTTGCAACCATTGCGATTCCATCCTATAACGGCTATACAAAAAAAGCAGCGCTATCAGAATTATTACGAGCCTCTTCAA
CCTATAAAGCCGATGTTGAAATATGCATTTATAACACTGGGGCATTATCAAGCTGTTCAGCTGGAAAAAATGGTATTCAA
GCTGCACTATCAGACAGTGATGACAATAAATACCTCAAATCTGTTTCTGTATCTGACGGAGTTATCGCCGTTGAAGGAAA
AGCTAGCTTAGCAGATTATGGCTATACCCTAACACCTAAGATAAGTGATAACAATATTAGCTGGTCAACAACCTGTAAAG
GCGAAGATACCAGCCTATTTCCAGCTAACTTCTGTGACTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
66.892 |
100 |
0.673 |
| pilA | Haemophilus influenzae Rd KW20 |
56.757 |
100 |
0.571 |
| pilA | Haemophilus influenzae 86-028NP |
59.286 |
95.238 |
0.565 |