Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6A10_RS02940 Genome accession   NZ_CP016604
Coordinates   646364..647668 (-) Length   434 a.a.
NCBI ID   WP_121122146.1    Uniprot ID   -
Organism   Otariodibacter oris strain Baika1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641364..652668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A10_RS02910 (A6A10_02890) ftsZ 641501..642763 (+) 1263 WP_121122155.1 cell division protein FtsZ -
  A6A10_RS02915 (A6A10_02895) lpxC 642788..643708 (+) 921 WP_121122153.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6A10_RS02920 (A6A10_02900) - 643788..644411 (-) 624 WP_121122152.1 LysE family transporter -
  A6A10_RS02925 (A6A10_02905) - 644412..644882 (-) 471 WP_121122151.1 phosphatidylglycerophosphatase A -
  A6A10_RS02930 (A6A10_02910) thiL 644885..645859 (-) 975 WP_121122150.1 thiamine-phosphate kinase -
  A6A10_RS02935 (A6A10_02915) nusB 645869..646285 (-) 417 WP_121122148.1 transcription antitermination factor NusB -
  A6A10_RS02940 (A6A10_02920) comE 646364..647668 (-) 1305 WP_121122146.1 type IV pilus secretin PilQ Machinery gene
  A6A10_RS02945 (A6A10_02925) - 647682..648092 (-) 411 WP_121122144.1 hypothetical protein -
  A6A10_RS02950 (A6A10_02930) - 648102..648620 (-) 519 WP_121122141.1 hypothetical protein -
  A6A10_RS02955 (A6A10_02935) - 648630..649136 (-) 507 WP_147404743.1 hypothetical protein -
  A6A10_RS02960 (A6A10_02940) - 649118..649663 (-) 546 WP_147404742.1 hypothetical protein -
  A6A10_RS02965 (A6A10_02945) - 649966..652539 (+) 2574 WP_121122134.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48434.56 Da        Isoelectric Point: 9.2346

>NTDB_id=189580 A6A10_RS02940 WP_121122146.1 646364..647668(-) (comE) [Otariodibacter oris strain Baika1]
MKYFNLITIFFIQTAFSSSITISLKDAPTKEILSYLAIETGNNIIVKDNIDSNTTLYIKQSDFNKIINQIAIINNLSIHK
NDNIYMVSKEEKPLNTLDDNLNQSVPNITNIPDTSIFLKTKTIKLYHSKASKIIESITKGNGNILSEAGYLHFDDRSNQI
IIKDTEKSINTISQLIKQLDMPIPQIAIEARIVTISSENLKELGVRWGLFSPTDQHHSFAGNLEGNGSVVNNLNVNFPVS
NAASAVLQIAKINGRVLDLELNALERENHVEIIASPRLLTTNKQQASIKQGTEIPYAIYDKKSETTDVEFKKAVLGLEVT
PQLSRNNQILLDLLVTQNAPNSQQGVNELTTIDKQELKTQVIAHHGETIVLGGVFQHLISKSENRVPILGSIPVIKHLFS
QSRDKISKRELIIFVTPYIINPQSTVKIKKSAHK

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=189580 A6A10_RS02940 WP_121122146.1 646364..647668(-) (comE) [Otariodibacter oris strain Baika1]
ATGAAATACTTTAATCTAATCACCATATTTTTTATTCAGACTGCATTTTCATCATCAATTACTATCTCTTTAAAAGATGC
CCCAACAAAAGAAATACTCTCTTACCTTGCTATAGAAACGGGAAATAATATTATTGTAAAAGATAATATAGACTCAAACA
CAACTTTATACATAAAGCAAAGTGATTTTAATAAAATTATCAATCAGATAGCAATAATAAATAATTTGTCCATACATAAA
AATGATAATATCTATATGGTTTCAAAAGAGGAAAAACCTCTGAATACCTTAGATGACAATCTTAATCAAAGTGTTCCTAA
TATTACGAATATTCCAGATACTTCTATATTTCTCAAAACAAAAACAATCAAGTTATATCATTCTAAAGCCTCAAAGATTA
TTGAATCTATCACAAAAGGTAATGGAAATATTTTATCTGAAGCTGGCTATTTGCATTTTGATGATAGAAGTAATCAAATC
ATTATAAAAGATACTGAAAAATCAATTAACACTATATCTCAATTGATAAAGCAACTTGATATGCCAATCCCACAGATAGC
AATCGAAGCTAGAATAGTGACTATTAGCAGTGAAAACTTAAAAGAATTAGGTGTTAGATGGGGGCTATTTTCTCCCACGG
ATCAACATCACTCCTTTGCAGGAAATCTTGAAGGGAATGGAAGTGTGGTCAATAATCTTAATGTAAACTTTCCTGTCAGC
AATGCTGCCTCTGCTGTTTTACAAATTGCGAAAATCAATGGCAGAGTGCTTGATCTAGAACTAAACGCATTAGAACGTGA
AAATCATGTTGAAATTATTGCAAGCCCTCGTTTATTAACCACGAATAAGCAACAGGCCAGTATTAAACAAGGTACTGAAA
TTCCTTACGCTATTTATGATAAAAAAAGCGAAACAACAGATGTTGAATTTAAAAAAGCCGTACTAGGCTTAGAGGTTACT
CCTCAGCTTTCTAGAAATAACCAAATTTTACTGGATTTACTTGTCACTCAAAATGCCCCTAACAGCCAACAAGGTGTAAA
TGAACTCACAACTATAGATAAACAAGAATTAAAAACACAAGTGATTGCTCATCATGGTGAAACCATCGTATTAGGAGGAG
TATTTCAGCACCTTATTTCAAAAAGTGAAAATCGAGTACCAATATTAGGTAGTATTCCTGTTATAAAGCATCTATTTAGT
CAAAGTAGAGATAAAATATCAAAACGAGAACTCATTATATTCGTCACACCTTATATCATAAACCCGCAATCAACAGTAAA
AATCAAGAAATCTGCGCATAAATGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(120-185)

Bacterial type II and III secretion system protein (Secretin)

(263-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

58.865

97.465

0.574
  comE Haemophilus influenzae 86-028NP

49.406

97.005

0.479
  comE Haemophilus influenzae Rd KW20

49.88

95.622

0.477
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.952

96.313

0.385
  pilQ Vibrio cholerae strain A1552

39.952

96.313

0.385
  pilQ Vibrio campbellii strain DS40M4

38.028

98.157

0.373

Multiple sequence alignment