Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6A10_RS02095 Genome accession   NZ_CP016604
Coordinates   440687..441247 (+) Length   186 a.a.
NCBI ID   WP_121123354.1    Uniprot ID   A0A420XFP6
Organism   Otariodibacter oris strain Baika1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 435687..446247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A10_RS02085 (A6A10_02065) - 437212..437586 (-) 375 WP_121123350.1 YacL family protein -
  A6A10_RS02090 (A6A10_02070) uvrA 437678..440506 (-) 2829 WP_121123352.1 excinuclease ABC subunit UvrA -
  A6A10_RS02095 (A6A10_02075) ssb 440687..441247 (+) 561 WP_121123354.1 single-stranded DNA-binding protein Machinery gene
  A6A10_RS02100 (A6A10_02080) - 441360..443042 (-) 1683 WP_121123355.1 ATP-dependent nuclease -
  A6A10_RS02105 (A6A10_02085) - 443039..444376 (-) 1338 WP_170143764.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20614.35 Da        Isoelectric Point: 5.2691

>NTDB_id=189579 A6A10_RS02095 WP_121123354.1 440687..441247(+) (ssb) [Otariodibacter oris strain Baika1]
MASVNKVIIVGNLGNDPDMRTMPNGDAVANISVATTESWTDKNTGERRENTEWHRIVFFRRQAEVVGQYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGGRNAQAGGYNDGQNQGGWNNSAPAPRANNNNYNQGGYNDNYSQSNNFGGGS
KAPAQQAKPAPQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=189579 A6A10_RS02095 WP_121123354.1 440687..441247(+) (ssb) [Otariodibacter oris strain Baika1]
ATGGCAAGTGTAAATAAAGTGATTATTGTGGGAAATTTAGGAAATGATCCTGATATGCGTACCATGCCAAATGGAGATGC
CGTTGCAAATATCAGCGTTGCAACAACAGAAAGTTGGACTGATAAAAATACAGGCGAACGCCGTGAAAACACAGAATGGC
ACCGTATCGTATTCTTCCGTCGTCAAGCAGAAGTGGTGGGACAATATTTACGTAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAGAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGTTACACAACAGAAATCCAAGGCGACGTATTACAAAT
GCTTGGTGGCAGAAATGCACAAGCAGGCGGATACAATGATGGTCAAAACCAAGGCGGATGGAATAATTCAGCCCCAGCAC
CAAGAGCAAATAATAACAATTATAATCAAGGTGGTTATAACGACAATTATTCACAATCAAATAACTTCGGTGGCGGTTCA
AAAGCCCCTGCACAACAAGCTAAACCAGCTCCACAAGCAGAACCACCAATGGATAATTTTGATGATGATATACCGTTTTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420XFP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.471

100

0.769
  ssb Vibrio cholerae strain A1552

52.02

100

0.554
  ssb Neisseria gonorrhoeae MS11

42.408

100

0.435
  ssb Neisseria meningitidis MC58

42.328

100

0.43

Multiple sequence alignment