Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCM43_RS01795 Genome accession   NZ_CP016588
Coordinates   330048..330560 (+) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus thuringiensis strain KNU-07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 325048..335560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS01765 (BCM43_01765) spo0J 325496..326347 (+) 852 WP_001051829.1 stage 0 sporulation protein Spo0J -
  BCM43_RS01770 (BCM43_01770) yyaC 326368..326964 (-) 597 WP_001020715.1 spore protease YyaC -
  BCM43_RS01775 (BCM43_01775) - 327224..328105 (+) 882 WP_000364815.1 mechanosensitive ion channel family protein -
  BCM43_RS01780 (BCM43_01780) - 328126..328323 (+) 198 WP_000435485.1 DUF951 domain-containing protein -
  BCM43_RS01785 (BCM43_01785) ychF 328439..329539 (+) 1101 WP_000524672.1 redox-regulated ATPase YchF -
  BCM43_RS01790 (BCM43_01790) rpsF 329731..330021 (+) 291 WP_065702718.1 30S ribosomal protein S6 -
  BCM43_RS01795 (BCM43_01795) ssbA 330048..330560 (+) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  BCM43_RS01800 (BCM43_01800) rpsR 330606..330839 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  BCM43_RS01805 (BCM43_01805) - 330920..331855 (+) 936 WP_000806422.1 YybS family protein -
  BCM43_RS01810 (BCM43_01810) - 331934..333907 (+) 1974 WP_001113788.1 DHH family phosphoesterase -
  BCM43_RS01815 (BCM43_01815) rplI 333904..334350 (+) 447 WP_065702720.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=189402 BCM43_RS01795 WP_000981966.1 330048..330560(+) (ssbA) [Bacillus thuringiensis strain KNU-07]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=189402 BCM43_RS01795 WP_000981966.1 330048..330560(+) (ssbA) [Bacillus thuringiensis strain KNU-07]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment