Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BBH51_RS03400 Genome accession   NZ_CP016553
Coordinates   679798..680250 (-) Length   150 a.a.
NCBI ID   WP_005550263.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674798..685250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS03375 (BBH51_03375) - 674955..676082 (-) 1128 WP_005539200.1 DUF4123 domain-containing protein -
  BBH51_RS03380 (BBH51_03380) - 676112..676291 (-) 180 WP_187374682.1 hypothetical protein -
  BBH51_RS03385 (BBH51_03385) - 676460..677149 (-) 690 WP_033001430.1 prepilin peptidase -
  BBH51_RS03390 (BBH51_03390) pilC 677146..678369 (-) 1224 WP_005540455.1 type II secretion system F family protein Machinery gene
  BBH51_RS03395 (BBH51_03395) pilB 678362..679771 (-) 1410 WP_005540457.1 GspE/PulE family protein Machinery gene
  BBH51_RS03400 (BBH51_03400) pilA 679798..680250 (-) 453 WP_005550263.1 pilin Machinery gene
  BBH51_RS03405 (BBH51_03405) ampD 680372..680926 (+) 555 WP_005540460.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BBH51_RS03410 (BBH51_03410) nanQ 681400..681870 (-) 471 WP_005540462.1 N-acetylneuraminate anomerase -
  BBH51_RS03415 (BBH51_03415) pnp 682164..684293 (+) 2130 WP_032997160.1 polyribonucleotide nucleotidyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15503.95 Da        Isoelectric Point: 9.4349

>NTDB_id=189129 BBH51_RS03400 WP_005550263.1 679798..680250(-) (pilA) [Aggregatibacter actinomycetemcomitans strain IDH781]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAATGVSWNAACGNNAGIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=189129 BBH51_RS03400 WP_005550263.1 679798..680250(-) (pilA) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCGGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCACCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGGCATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

63.043

92

0.58
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513

Multiple sequence alignment