NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	B7R57_RS03850	Genome accession	NZ_CP020656
Coordinates	764705..765391 (-)	Length	228 a.a.
NCBI ID	WP_173677720.1	Uniprot ID	-
Organism	Staphylococcus aureus strain K5
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 759705..770391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7R57_RS03805 (B7R57_03785)	rpmA	760476..760760 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
B7R57_RS03810 (B7R57_03790)	-	760772..761092 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
B7R57_RS03815 (B7R57_03795)	rplU	761098..761406 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
B7R57_RS03820 (B7R57_03800)	mreD	761642..762172 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
B7R57_RS03825 (B7R57_03805)	mreC	762172..763014 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
B7R57_RS03830 (B7R57_03810)	-	763213..763332 (-)	120	WP_000840602.1	hypothetical protein	-
B7R57_RS03835 (B7R57_03815)	-	763406..763879 (-)	474	WP_001236734.1	DUF4930 family protein	-
B7R57_RS03840 (B7R57_03820)	-	764039..764236 (+)	198	WP_000025835.1	hypothetical protein	-
B7R57_RS03845 (B7R57_03825)	-	764353..764637 (-)	285	WP_000171856.1	hypothetical protein	-
B7R57_RS03850 (B7R57_03830)	ysxA/radC	764705..765391 (-)	687	WP_173677720.1	DNA repair protein RadC	Machinery gene
B7R57_RS03855 (B7R57_03835)	-	765388..766095 (-)	708	WP_000261115.1	A24 family peptidase	-
B7R57_RS03865 (B7R57_03845)	-	766365..767636 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
B7R57_RS03870 (B7R57_03850)	-	767649..770279 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.25 Da Isoelectric Point: 7.0539

                                >NTDB_id=188938 B7R57_RS03850 WP_173677720.1 764705..765391(-) (ysxA/radC) [Staphylococcus aureus strain K5]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLGILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=188938 B7R57_RS03850 WP_173677720.1 764705..765391(-) (ysxA/radC) [Staphylococcus aureus strain K5]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGGTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG0188938