Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   B7R57_RS03790 Genome accession   NZ_CP020656
Coordinates   757748..758350 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain K5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752748..763350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7R57_RS03770 (B7R57_03750) yajC 754244..754504 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  B7R57_RS03775 (B7R57_03755) tgt 754523..755662 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  B7R57_RS03780 (B7R57_03760) queA 755685..756710 (-) 1026 WP_001019174.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  B7R57_RS03785 (B7R57_03765) ruvB 756712..757716 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B7R57_RS03790 (B7R57_03770) ruvA 757748..758350 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  B7R57_RS03795 (B7R57_03775) - 758364..758819 (-) 456 WP_000368903.1 ACT domain-containing protein -
  B7R57_RS03800 (B7R57_03780) obgE 758832..760124 (-) 1293 WP_000496100.1 GTPase ObgE -
  B7R57_RS03805 (B7R57_03785) rpmA 760476..760760 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  B7R57_RS03810 (B7R57_03790) - 760772..761092 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  B7R57_RS03815 (B7R57_03795) rplU 761098..761406 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  B7R57_RS03820 (B7R57_03800) mreD 761642..762172 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  B7R57_RS03825 (B7R57_03805) mreC 762172..763014 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  B7R57_RS03830 (B7R57_03810) - 763213..763332 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=188937 B7R57_RS03790 WP_000271547.1 757748..758350(-) (ruvA) [Staphylococcus aureus strain K5]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=188937 B7R57_RS03790 WP_000271547.1 757748..758350(-) (ruvA) [Staphylococcus aureus strain K5]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425