Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBI08_RS16725 Genome accession   NZ_CP016537
Coordinates   3409517..3409990 (-) Length   157 a.a.
NCBI ID   WP_008497641.1    Uniprot ID   A0AAI9WAF2
Organism   Planococcus halocryophilus strain DSM 24743     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3404517..3414990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS16705 (BBI08_12390) rplI 3405623..3406072 (-) 450 WP_065528365.1 50S ribosomal protein L9 -
  BBI08_RS16710 (BBI08_12395) - 3406069..3408042 (-) 1974 WP_008497639.1 DHH family phosphoesterase -
  BBI08_RS16715 (BBI08_12400) - 3408057..3409016 (-) 960 WP_008497640.1 YybS family protein -
  BBI08_RS16720 (BBI08_12405) rpsR 3409231..3409467 (-) 237 WP_006830564.1 30S ribosomal protein S18 -
  BBI08_RS16725 (BBI08_12410) ssbA 3409517..3409990 (-) 474 WP_008497641.1 single-stranded DNA-binding protein Machinery gene
  BBI08_RS16730 (BBI08_12415) rpsF 3410041..3410328 (-) 288 WP_008427712.1 30S ribosomal protein S6 -
  BBI08_RS16735 (BBI08_12420) - 3410507..3411064 (+) 558 WP_008497643.1 DUF3267 domain-containing protein -
  BBI08_RS16740 (BBI08_12425) - 3411078..3411458 (-) 381 WP_065528366.1 gamma-glutamylcyclotransferase family protein -
  BBI08_RS16745 (BBI08_12430) ychF 3411927..3413027 (-) 1101 WP_008497645.1 redox-regulated ATPase YchF -
  BBI08_RS16750 (BBI08_12435) - 3413116..3413316 (-) 201 WP_008427706.1 DUF951 domain-containing protein -
  BBI08_RS16755 (BBI08_12440) - 3413331..3414224 (-) 894 WP_065528367.1 mechanosensitive ion channel family protein -
  BBI08_RS16760 (BBI08_12445) - 3414244..3414957 (-) 714 WP_008497647.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17301.93 Da        Isoelectric Point: 4.9561

>NTDB_id=188936 BBI08_RS16725 WP_008497641.1 3409517..3409990(-) (ssbA) [Planococcus halocryophilus strain DSM 24743]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANTDRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=188936 BBI08_RS16725 WP_008497641.1 3409517..3409990(-) (ssbA) [Planococcus halocryophilus strain DSM 24743]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGTTACACACCAAGCGGCGCGGCGGTTGC
TCGATTTACACTAGCTGTAAACCGGACTTTCTCGAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACCGTTT
GGCGCAAACAAGCTGAAAATACAGCGAATTTCCTTAAAAAAGGAAGCTTAGCAGGTGTTGAAGGCCGTATCCAAACTGGT
AGCTACGAGGGACAAGACGGGAAACGCGTCTATACAACAGAAGTAGTGGCGGACAGCGTTCAATTCCTTGAACCAAAAAG
CGCCAATACGGATCGTTCACAAGGACAGCAGCCTTCCTATCAACAGAACCAATCACCAAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGATGAAGATCCATTCTCAAGCGGTAGCGGCCCGATCGAAGTATCGGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

67.516

0.459
  ssb Neisseria gonorrhoeae MS11

36.207

100

0.401
  ssb Neisseria meningitidis MC58

35.465

100

0.389
  ssb Vibrio cholerae strain A1552

33.333

100

0.382

Multiple sequence alignment