Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSY240_RS02945 Genome accession   NZ_CP016499
Coordinates   630725..631270 (+) Length   181 a.a.
NCBI ID   WP_069041360.1    Uniprot ID   A0AAI8D6F3
Organism   Agrobacterium sp. RAC06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625725..636270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY240_RS02935 (BSY240_588) - 626635..627438 (-) 804 WP_069041358.1 DUF72 domain-containing protein -
  BSY240_RS02940 (BSY240_589) uvrA 627535..630456 (-) 2922 WP_069041359.1 excinuclease ABC subunit UvrA -
  BSY240_RS02945 (BSY240_590) ssb 630725..631270 (+) 546 WP_069041360.1 single-stranded DNA-binding protein Machinery gene
  BSY240_RS02955 - 632039..632836 (+) 798 WP_069041362.1 site-specific integrase -
  BSY240_RS02960 (BSY240_592) - 632833..634338 (+) 1506 WP_083229542.1 site-specific integrase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18839.56 Da        Isoelectric Point: 5.9441

>NTDB_id=188603 BSY240_RS02945 WP_069041360.1 630725..631270(+) (ssb) [Agrobacterium sp. RAC06]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDKNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGSTVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFSGNLTMLGGRGDGGGASRGGNDFGGADYGGGGGGYDGGYGSPAPSRGGASGGA
SRGGSAPSGGFSRDLDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=188603 BSY240_RS02945 WP_069041360.1 630725..631270(+) (ssb) [Agrobacterium sp. RAC06]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGATCGGCAATCTCGGTGCCGATCCCGAAATTCGCCGGACCCAGGACGGCCG
GCCGATCGCCAACCTGCGCATCGCGACCTCGGAAACCTGGCGCGACAAGAACAGCGGCGAACGCAAGGAAAAGACCGAAT
GGCATTCGGTCGTGATCTTCAATGAAGGCCTCTGCAAGGTTGCCGAACAGTATCTGAAGAAGGGCTCGACCGTTTACATC
GAGGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCGCGGACCGTTACTCGACGGAAGTCGTGCTGCAGGGCTT
CAGCGGCAACCTGACCATGCTTGGCGGTCGCGGTGATGGCGGCGGCGCCTCGCGTGGCGGCAATGACTTTGGCGGTGCCG
ATTACGGCGGCGGCGGCGGTGGCTACGACGGCGGCTACGGTTCGCCTGCACCTTCGCGTGGCGGCGCCTCCGGTGGCGCA
AGCCGAGGCGGCAGCGCCCCTTCCGGCGGCTTCTCCCGCGATCTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.494

98.343

0.536
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.475
  ssb Neisseria gonorrhoeae MS11

40.426

100

0.42
  ssb Neisseria meningitidis MC58

40.426

100

0.42

Multiple sequence alignment