Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4W75_RS09280 Genome accession   NZ_CP016467
Coordinates   1783255..1783767 (-) Length   170 a.a.
NCBI ID   WP_253732546.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1778255..1788767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W75_RS09260 (A4W75_09040) dnaB 1778717..1780119 (-) 1403 Protein_1814 replicative DNA helicase -
  A4W75_RS09265 (A4W75_09045) rplI 1780264..1780716 (-) 453 WP_004265788.1 50S ribosomal protein L9 -
  A4W75_RS09270 (A4W75_09050) - 1780738..1782768 (-) 2031 WP_004265804.1 DHH family phosphoesterase -
  A4W75_RS09275 (A4W75_09055) rpsR 1782985..1783224 (-) 240 WP_004265822.1 30S ribosomal protein S18 -
  A4W75_RS09280 (A4W75_09060) ssb 1783255..1783767 (-) 513 WP_253732546.1 single-stranded DNA-binding protein Machinery gene
  A4W75_RS09285 (A4W75_09065) rpsF 1783807..1784103 (-) 297 WP_004265809.1 30S ribosomal protein S6 -
  A4W75_RS09290 (A4W75_09070) gyrA 1784361..1786931 (-) 2571 WP_253732548.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18648.18 Da        Isoelectric Point: 4.6856

>NTDB_id=188461 A4W75_RS09280 WP_253732546.1 1783255..1783767(-) (ssb) [Latilactobacillus curvatus strain TMW 1.27]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTNPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=188461 A4W75_RS09280 WP_253732546.1 1783255..1783767(-) (ssb) [Latilactobacillus curvatus strain TMW 1.27]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAACCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

96.471

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.571

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment